Gm50458 Pseudogene Detail

Summary

• Symbol
  Gm50458
• Name
  predicted gene, 50458

• Feature Type
  pseudogene
• IDs
  MGI:6324723
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:145004327-145004488 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6324723	pseudogene	Chr5:145004327-145004488 (+)
129S1/SvImJ	ENSMUSG00200042316	pseudogene	Chr5:138841809-138841970 (+)
A/J	ENSMUSG00195046823	pseudogene	Chr5:138503680-138503841 (+)
AKR/J	ENSMUSG00220023995	pseudogene	Chr5:137726500-137726661 (+)
BALB/cJ	ENSMUSG00180033797	pseudogene	Chr5:138605626-138605787 (+)
C3H/HeJ	ENSMUSG00175049909	pseudogene	Chr5:140531076-140531237 (+)
C57BL/6NJ	ENSMUSG00215042285	pseudogene	Chr5:138454353-138454514 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037205	pseudogene	Chr5:137886871-137887032 (+)
CBA/J	ENSMUSG00210024077	pseudogene	Chr5:139343306-139343467 (+)
DBA/2J	ENSMUSG00185043109	pseudogene	Chr5:142333977-142334138 (+)
FVB/NJ	ENSMUSG00205043734	pseudogene	Chr5:138148997-138149158 (+)
JF1/MsJ	ENSUMUG00000052447	pseudogene	Chr5:145209174-145209335 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190045779	pseudogene	Chr5:138287645-138287806 (+)
NZO/HlLtJ	ENSMUSG00225009648	pseudogene	Chr5:153921850-153922011 (+)
PWK/PhJ	ENSLUMG00010021639	pseudogene	Chr5:136920807-136920968 (+)
SPRET/EiJ	ENSMSPG00010041754	pseudogene	Chr5:140526595-140526749 (+)
WSB/EiJ	ENSIUOG00005040255	pseudogene	Chr5:140827721-140827882 (+)

Homology

• Gene Tree
  Gm50458
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000118480 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118480	Ensembl Gene Model | MGI Sequence Detail	162	C57BL/6J
transcript	ENSMUST00000238523	Ensembl | MGI Sequence Detail	162	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;