Gm50456 Pseudogene Detail

Summary

• Symbol
  Gm50456
• Name
  predicted gene, 50456

• Feature Type
  pseudogene
• IDs
  MGI:6324720
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:9475588-9475688 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6324720	pseudogene	Chr15:9475588-9475688 (+)
129S1/SvImJ	ENSMUSG00200034424	pseudogene	Chr15:6455872-6455972 (+)
A/J	ENSMUSG00195010397	pseudogene	Chr15:6353537-6353637 (+)
AKR/J	ENSMUSG00220023270	pseudogene	Chr15:6298598-6298698 (+)
BALB/cJ	ENSMUSG00180036509	pseudogene	Chr15:6365627-6365727 (+)
C3H/HeJ	ENSMUSG00175033804	pseudogene	Chr15:6522985-6523085 (+)
C57BL/6NJ	ENSMUSG00215029181	pseudogene	Chr15:6403279-6403379 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026793	pseudogene	Chr15:6473880-6473980 (+)
CBA/J	ENSMUSG00210025508	pseudogene	Chr15:6508021-6508121 (+)
DBA/2J	ENSMUSG00185032764	pseudogene	Chr15:6465021-6465121 (+)
FVB/NJ	ENSMUSG00205031329	pseudogene	Chr15:6346309-6346409 (+)
JF1/MsJ	ENSUMUG00000037069	pseudogene	Chr15:6562085-6562185 (+)
LP/J	ENSMUSG00230020265	pseudogene	Chr15:9948887-9948987 (+)
NOD/ShiLtJ	ENSMUSG00190010604	pseudogene	Chr15:6424322-6424422 (+)
NZO/HlLtJ	ENSMUSG00225024116	pseudogene	Chr15:10185380-10185480 (+)
PWK/PhJ	ENSLUMG00010037365	pseudogene	Chr15:6611267-6611367 (+)
SPRET/EiJ	ENSMSPG00010033548	pseudogene	Chr15:6608166-6608266 (+)
WSB/EiJ	ENSIUOG00005030669	pseudogene	Chr15:6422590-6422690 (+)

Homology

• Gene Tree
  Gm50456
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118411 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118411	Ensembl Gene Model | MGI Sequence Detail	101	C57BL/6J
transcript	ENSMUST00000238688	Ensembl | MGI Sequence Detail	101	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;