Gm50447 Pseudogene Detail

Summary

• Symbol
  Gm50447
• Name
  predicted gene, 50447

• Feature Type
  pseudogene
• IDs
  MGI:6303385
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:52194859-52195288 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  166 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303385	pseudogene	Chr18:52194859-52195288 (+)
129S1/SvImJ	ENSMUSG00200030509	pseudogene	Chr18:49251397-49251826 (+)
A/J	ENSMUSG00195025761	pseudogene	Chr18:49392352-49392781 (+)
AKR/J	ENSMUSG00220021297	pseudogene	Chr18:49343610-49344039 (+)
BALB/cJ	ENSMUSG00180007896	pseudogene	Chr18:49952967-49953396 (+)
C3H/HeJ	ENSMUSG00175011034	pseudogene	Chr18:49561842-49562271 (+)
C57BL/6NJ	ENSMUSG00215009474	pseudogene	Chr18:48916130-48916559 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013894	pseudogene	Chr18:48791453-48791886 (+)
CBA/J	ENSMUSG00210022641	pseudogene	Chr18:49495379-49495808 (+)
DBA/2J	ENSMUSG00185028839	pseudogene	Chr18:49415299-49415728 (+)
FVB/NJ	ENSMUSG00205015370	pseudogene	Chr18:48861977-48862406 (+)
JF1/MsJ	ENSUMUG00000029952	pseudogene	Chr18:49305661-49306094 (+)
LP/J	ENSMUSG00230012466	pseudogene	Chr18:51411313-51411742 (+)
NOD/ShiLtJ	ENSMUSG00190028044	pseudogene	Chr18:49113044-49113473 (+)
NZO/HlLtJ	ENSMUSG00225035762	pseudogene	Chr18:51315369-51315798 (+)
PWK/PhJ	ENSLUMG00010021812	pseudogene	Chr18:49488428-49488861 (+)
SPRET/EiJ	ENSMSPG00010013779	pseudogene	Chr18:49794767-49795196 (+)
WSB/EiJ	ENSIUOG00005009424	pseudogene	Chr18:49008577-49009006 (+)

Homology

• Gene Tree
  Gm50447
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm50447
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118351 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118351	Ensembl Gene Model | MGI Sequence Detail	430	C57BL/6J
transcript	ENSMUST00000236725	Ensembl | MGI Sequence Detail	430	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67