Gm50444 Pseudogene Detail

Summary

• Symbol
  Gm50444
• Name
  predicted gene, 50444

• Feature Type
  pseudogene
• IDs
  MGI:6303380
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr19:49542457-49545845 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  215 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303380	pseudogene	Chr19:49542457-49545845 (+)
129S1/SvImJ	ENSMUSG00200021987	pseudogene	Chr19:46258722-46262110 (+)
A/J	ENSMUSG00195019149	pseudogene	Chr19:46401074-46404462 (+)
AKR/J	ENSMUSG00220019572	pseudogene	Chr19:46187530-46190918 (+)
BALB/cJ	ENSMUSG00180022259	pseudogene	Chr19:46643929-46647317 (+)
C3H/HeJ	ENSMUSG00175006478	pseudogene	Chr19:46177133-46180521 (+)
C57BL/6NJ	ENSMUSG00215004939	pseudogene	Chr19:46249473-46252861 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016978	pseudogene	Chr19:45819321-45822822 (+)
CBA/J	ENSMUSG00210019448	pseudogene	Chr19:46256620-46260008 (+)
DBA/2J	ENSMUSG00185009588	pseudogene	Chr19:46770168-46773556 (+)
FVB/NJ	ENSMUSG00205037059	pseudogene	Chr19:45672111-45675499 (+)
JF1/MsJ	ENSUMUG00000047344	pseudogene	Chr19:46948017-46951502 (+)
LP/J	ENSMUSG00230026267	pseudogene	Chr19:47532949-47536337 (+)
NOD/ShiLtJ	ENSMUSG00190005818	pseudogene	Chr19:46125690-46129078 (+)
NZO/HlLtJ	ENSMUSG00225025775	pseudogene	Chr19:51108328-51111716 (+)
PWK/PhJ	ENSLUMG00010001225	pseudogene	Chr19:46035265-46038749 (+)
SPRET/EiJ	ENSMSPG00010008271	pseudogene	Chr19:45787254-45789601 (+)
WSB/EiJ	ENSIUOG00005006920	pseudogene	Chr19:45599262-45602642 (+)

Homology

• Gene Tree
  Gm50444
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000117931 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117931	Ensembl Gene Model | MGI Sequence Detail	3389	C57BL/6J
transcript	ENSMUST00000238143	Ensembl | MGI Sequence Detail	841	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;