Gm50438 Pseudogene Detail

Summary

• Symbol
  Gm50438
• Name
  predicted gene, 50438

• Feature Type
  pseudogene
• IDs
  MGI:6303372
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:90549060-90549613 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303372	pseudogene	Chr18:90549060-90549613 (+)
129S1/SvImJ	ENSMUSG00200015446	pseudogene	Chr18:87901509-87902062 (+)
A/J	ENSMUSG00195001314	pseudogene	Chr18:87823633-87824186 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180002776	pseudogene	Chr18:88424923-88425476 (+)
C3H/HeJ	ENSMUSG00175018823	pseudogene	Chr18:87936411-87936964 (+)
C57BL/6NJ	ENSMUSG00215004358	pseudogene	Chr18:87412718-87413271 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005582	pseudogene	Chr18:86779488-86780041 (+)
CBA/J	ENSMUSG00210018129	pseudogene	Chr18:87887924-87888477 (+)
DBA/2J	ENSMUSG00185004374	pseudogene	Chr18:87775152-87775705 (+)
FVB/NJ	ENSMUSG00205014569	pseudogene	Chr18:87236112-87236665 (+)
JF1/MsJ	ENSUMUG00000018602	pseudogene	Chr18:87626383-87626936 (+)
LP/J	ENSMUSG00230017730	pseudogene	Chr18:89959792-89960345 (+)
NOD/ShiLtJ	ENSMUSG00190003528	pseudogene	Chr18:87623724-87624277 (+)
NZO/HlLtJ	ENSMUSG00225023505	pseudogene	Chr18:89787319-89787872 (+)
PWK/PhJ	ENSLUMG00010004062	pseudogene	Chr18:88060336-88060889 (+)
SPRET/EiJ	ENSMSPG00010001368	pseudogene	Chr18:88591566-88592118 (+)
WSB/EiJ	ENSIUOG00005016301	pseudogene	Chr18:87290004-87290557 (+)

Homology

• Gene Tree
  Gm50438
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000117747 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117747	Ensembl Gene Model | MGI Sequence Detail	554	C57BL/6J
transcript	ENSMUST00000236589	Ensembl | MGI Sequence Detail	554	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;