Gm50433 Pseudogene Detail

Summary

• Symbol
  Gm50433
• Name
  predicted gene, 50433

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:6303365
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:21750542-21751047 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303365	pseudogene	Chr17:21735672-21752346 (+)
129S1/SvImJ	ENSMUSG00200039515	pseudogene	Chr17:17284523-17303290 (+)
A/J	ENSMUSG00195039573	pseudogene	Chr17:18148811-18167596 (+)
AKR/J	ENSMUSG00220028431	pseudogene	Chr17:17356724-17371009 (+)
BALB/cJ	ENSMUSG00180017728	pseudogene	Chr17:17439044-17457824 (+)
C3H/HeJ	ENSMUSG00175044883	pseudogene	Chr17:17205166-17260387 (+)
C57BL/6NJ	ENSMUSG00215043066	pseudogene	Chr17:17229291-17243515 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023243	pseudogene	Chr17:17784793-17803330 (+)
CBA/J	ENSMUSG00210043202	pseudogene	Chr17:17013095-17027376 (+)
DBA/2J	ENSMUSG00185041519	pseudogene	Chr17:19245242-19264054 (+)
FVB/NJ	ENSMUSG00205033711	pseudogene	Chr17:17729136-17743421 (+)
JF1/MsJ	ENSUMUG00000041842	pseudogene	Chr17:18408390-18424434 (+)
LP/J	ENSMUSG00230028246	pseudogene	Chr17:20643245-20662010 (+)
NOD/ShiLtJ	ENSMUSG00190043246	pseudogene	Chr17:17395654-17409937 (+)
NZO/HlLtJ	ENSMUSG00225054840	pseudogene	Chr17:22566281-22585038 (+)
PWK/PhJ	ENSLUMG00010021171	pseudogene	Chr17:16678400-16694482 (+)
SPRET/EiJ	ENSMSPG00010041989	pseudogene	Chr17:18088752-18104801 (+)
WSB/EiJ	ENSIUOG00005043270	pseudogene	Chr17:17985891-18004430 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  16 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm50433
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31

• Ensembl
  ENSMUSG00000117037 (Evidence), ENSMUSG00000121743 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117037	Ensembl Gene Model | MGI Sequence Detail	506	C57BL/6J
transcript	ENSMUST00000233488	Ensembl | MGI Sequence Detail	506	Not Applicable

References

• Summaries
  All 17

  Phenotypes 16
• Earliest
  J:84774 Dunn LC, Studies of the genetic variability in populations of wild house mice. II. Analysis of eight additional alleles at locus T. Genetics. 1957;42:299-311
• Latest
  J:273736 Charron Y, et al., Two isoforms of the RAC-specific guanine nucleotide exchange factor TIAM2 act oppositely on transmission ratio distortion by the mouse t-haplotype. PLoS Genet. 2019 Feb;15(2):e1007964