Gm50432 Pseudogene Detail

Summary

• Symbol
  Gm50432
• Name
  predicted gene, 50432

• Feature Type
  pseudogene
• IDs
  MGI:6303364
  NCBI Gene: 112486228
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:3255793-3256070 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  41 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303364	pseudogene	Chr19:3255590-3256259 (+)
129S1/SvImJ	ENSMUSG00200052731	pseudogene	Chr19:14100-14751 (+)
A/J	ENSMUSG00195053085	pseudogene	Chr19:404968-405611 (+)
AKR/J	ENSMUSG00220050082	pseudogene	Chr19:177941-178624 (+)
BALB/cJ	ENSMUSG00180052387	pseudogene	Chr19:773160-773995 (+)
C3H/HeJ	ENSMUSG00175015650	pseudogene	Chr19:24517-25192 (+)
C57BL/6NJ	ENSMUSG00215048710	pseudogene	Chr19:252329-252980 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044903	pseudogene	Chr19:162078-162788 (+)
CBA/J	ENSMUSG00210050145	pseudogene	Chr19:24514-25125 (+)
DBA/2J	ENSMUSG00185053809	pseudogene	Chr19:400810-401421 (+)
FVB/NJ	ENSMUSG00205052711	pseudogene	Chr19:394558-395209 (+)
JF1/MsJ	ENSUMUG00000056860	pseudogene	Chr19:380709-381584 (+)
LP/J	ENSMUSG00230054246	pseudogene	Chr19:1320337-1320988 (+)
NOD/ShiLtJ	ENSMUSG00190013712	pseudogene	Chr19:54048530-54049237 (+)
NZO/HlLtJ	ENSMUSG00225027223	pseudogene	Chr19:5029194-5029845 (+)
PWK/PhJ	ENSLUMG00010008396	pseudogene	Chr19:147658-148477 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005050746	pseudogene	Chr19:14097-14876 (+)

Homology

• Gene Tree
  Gm50432
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000118052 (Evidence)
• NCBI Gene
  112486228

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118052	Ensembl Gene Model | MGI Sequence Detail	278	C57BL/6J
transcript	ENSMUST00000235308	Ensembl | MGI Sequence Detail	278	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm50432:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154172	Chr19:3255831-3255862 (+)	54 bp
Tssr154173	Chr19:3255909-3255915 (+)	119 bp