Gm50428 Pseudogene Detail

Summary

• Symbol
  Gm50428
• Name
  predicted gene, 50428

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:6303357
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:3184645-3184959 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  46 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303357	pseudogenic gene segment	Chr19:3184645-3184959 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195052985	pseudogenic gene segment	Chr19:334001-334315 (+)
AKR/J	ENSMUSG00220050668	pseudogenic gene segment	Chr19:106874-107188 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045370	pseudogenic gene segment	Chr19:91093-91407 (+)
CBA/J	no annotation
DBA/2J	ENSMUSG00185052979	pseudogenic gene segment	Chr19:329838-330152 (+)
FVB/NJ	ENSMUSG00205053142	pseudogenic gene segment	Chr19:323556-323870 (+)
JF1/MsJ	ENSUMUG00000056909	pseudogenic gene segment	Chr19:316578-316892 (+)
JF1/MsJ	ENSUMUG00000041315	pseudogenic gene segment	Chr16:308800-309117 (+)
LP/J	ENSMUSG00230054395	pseudogenic gene segment	Chr19:1249370-1249684 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225026947	pseudogenic gene segment	Chr19:4958227-4958541 (+)
PWK/PhJ	ENSLUMG00010009082	pseudogenic gene segment	Chr19:83080-83394 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm50428
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13

• Ensembl
  ENSMUSG00000117761 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117761	Ensembl Gene Model | MGI Sequence Detail	315	C57BL/6J
transcript	ENSMUST00000235610	Ensembl | MGI Sequence Detail	315	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm50428:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154168	Chr19:3184204-3184205 (+)	-440 bp