Gm50426 Pseudogene Detail

Summary

• Symbol
  Gm50426
• Name
  predicted gene, 50426

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:6303353
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr19:3234959-3235273 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  27 from dbSNP Build 142
• Strain Annotations
  26

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303353	pseudogenic gene segment	Chr19:3234959-3235273 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195052979	pseudogenic gene segment	Chr19:384317-384631 (+)
A/J	ENSMUSG00195045352	pseudogenic gene segment	Chr6:39999772-40000087 (+)
AKR/J	ENSMUSG00220050739	pseudogenic gene segment	Chr19:157288-157602 (+)
AKR/J	ENSMUSG00220009971	pseudogenic gene segment	Chr6:39601789-39602104 (+)
BALB/cJ	ENSMUSG00180051368	pseudogenic gene segment	Chr19:752529-752843 (+)
BALB/cJ	ENSMUSG00180048686	pseudogenic gene segment	Chr6:40128149-40128464 (+)
C3H/HeJ	ENSMUSG00175050963	pseudogenic gene segment	Chr6:39957143-39957458 (+)
C3H/HeJ	ENSMUSG00175014038	pseudogenic gene segment	Chr19:3860-4174 (+)
C57BL/6NJ	ENSMUSG00215046886	pseudogenic gene segment	Chr19:231675-231989 (+)
C57BL/6NJ	ENSMUSG00215049415	pseudogenic gene segment	Chr6:40083176-40083491 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045424	pseudogenic gene segment	Chr19:141410-141724 (+)
CBA/J	ENSMUSG00210052616	pseudogenic gene segment	Chr6:40006917-40007232 (+)
CBA/J	ENSMUSG00210050753	pseudogenic gene segment	Chr19:3860-4174 (+)
DBA/2J	ENSMUSG00185050775	pseudogenic gene segment	Chr6:40109406-40109721 (+)
DBA/2J	ENSMUSG00185053022	pseudogenic gene segment	Chr19:380154-380468 (+)
FVB/NJ	ENSMUSG00205053136	pseudogenic gene segment	Chr19:373880-374194 (+)
FVB/NJ	ENSMUSG00205051172	pseudogenic gene segment	Chr6:40008960-40009275 (+)
JF1/MsJ	ENSUMUG00000056908	pseudogenic gene segment	Chr19:360030-360344 (+)
LP/J	ENSMUSG00230021640	pseudogenic gene segment	Chr6:41033043-41033358 (+)
LP/J	ENSMUSG00230054399	pseudogenic gene segment	Chr19:1299685-1299999 (+)
NOD/ShiLtJ	ENSMUSG00190050951	pseudogenic gene segment	Chr6:39915299-39915614 (+)
NOD/ShiLtJ	ENSMUSG00190027232	pseudogenic gene segment	Chr16:181486-181800 (+)
NZO/HlLtJ	ENSMUSG00225026977	pseudogenic gene segment	Chr19:5008542-5008856 (+)
NZO/HlLtJ	ENSMUSG00225021021	pseudogenic gene segment	Chr6:43015700-43016015 (+)
PWK/PhJ	ENSLUMG00010009075	pseudogenic gene segment	Chr19:126967-127281 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm50426
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28

• Ensembl
  ENSMUSG00000118393 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118393	Ensembl Gene Model | MGI Sequence Detail	315	C57BL/6J
transcript	ENSMUST00000236616	Ensembl | MGI Sequence Detail	315	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;