Gm50422 Pseudogene Detail

Summary

• Symbol
  Gm50422
• Name
  predicted gene, 50422

• Feature Type
  pseudogene
• IDs
  MGI:6303347
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:23583262-23583643 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303347	pseudogene	Chr19:23583262-23583643 (+)
129S1/SvImJ	ENSMUSG00200020988	pseudogene	Chr19:20312026-20312407 (+)
A/J	ENSMUSG00195035726	pseudogene	Chr19:20448000-20448445 (+)
AKR/J	ENSMUSG00220020224	pseudogene	Chr19:20465579-20466024 (+)
BALB/cJ	ENSMUSG00180013960	pseudogene	Chr19:20792922-20793303 (+)
C3H/HeJ	ENSMUSG00175025353	pseudogene	Chr19:20165535-20166003 (+)
C57BL/6NJ	ENSMUSG00215031810	pseudogene	Chr19:20193449-20193830 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008884	pseudogene	Chr19:20065651-20066096 (+)
CBA/J	ENSMUSG00210015013	pseudogene	Chr19:20396818-20397286 (+)
DBA/2J	ENSMUSG00185026688	pseudogene	Chr19:20783216-20783684 (+)
FVB/NJ	ENSMUSG00205012798	pseudogene	Chr19:20220922-20221303 (+)
JF1/MsJ	ENSUMUG00000039194	pseudogene	Chr19:21008823-21009264 (+)
LP/J	ENSMUSG00230029673	pseudogene	Chr19:21621907-21622288 (+)
NOD/ShiLtJ	ENSMUSG00190021621	pseudogene	Chr19:20152955-20153400 (+)
NZO/HlLtJ	ENSMUSG00225034613	pseudogene	Chr19:25375575-25376043 (+)
PWK/PhJ	ENSLUMG00010036449	pseudogene	Chr19:20345470-20345911 (+)
SPRET/EiJ	ENSMSPG00010039046	pseudogene	Chr19:20326436-20326891 (+)
WSB/EiJ	ENSIUOG00005007492	pseudogene	Chr19:19883591-19883972 (+)

Homology

• Gene Tree
  Gm50422
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000117944 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117944	Ensembl Gene Model | MGI Sequence Detail	382	C57BL/6J
transcript	ENSMUST00000237913	Ensembl | MGI Sequence Detail	382	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm50422:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155590	Chr19:23583201-23583207 (+)	-58 bp