Gm50416 Gene Detail

Summary

• Symbol
  Gm50416
• Name
  predicted gene, 50416

• Feature Type
  lncRNA gene
• IDs
  MGI:6303337
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:83510032-83543469 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1097 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303337	lncRNA gene	Chr18:83510032-83543469 (-)
129S1/SvImJ	ENSMUSG00200030207	lncRNA gene	Chr18:80748972-80777301 (-)
A/J	ENSMUSG00195004982	lncRNA gene	Chr18:80824238-80853314 (-)
AKR/J	ENSMUSG00220017572	lncRNA gene	Chr18:80740054-80769133 (-)
BALB/cJ	ENSMUSG00180014035	lncRNA gene	Chr18:81390920-81419999 (-)
C3H/HeJ	ENSMUSG00175012800	lncRNA gene	Chr18:80938072-80967151 (-)
C57BL/6NJ	ENSMUSG00215029285	lncRNA gene	Chr18:80307879-80336961 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029434	lncRNA gene	Chr18:79833640-79862094 (-)
CBA/J	ENSMUSG00210035970	lncRNA gene	Chr18:80884386-80913474 (-)
DBA/2J	ENSMUSG00185011454	lncRNA gene	Chr18:80786831-80815906 (-)
FVB/NJ	ENSMUSG00205018222	lncRNA gene	Chr18:80193361-80222436 (-)
JF1/MsJ	ENSUMUG00000034354	lncRNA gene	Chr18:80653645-80681996 (-)
LP/J	ENSMUSG00230018128	lncRNA gene	Chr18:82837936-82866265 (-)
NOD/ShiLtJ	ENSMUSG00190024175	lncRNA gene	Chr18:80610547-80639631 (-)
NZO/HlLtJ	ENSMUSG00225023608	lncRNA gene	Chr18:82714591-82743666 (-)
PWK/PhJ	ENSLUMG00010007004	lncRNA gene	Chr18:81052816-81081122 (-)
SPRET/EiJ	ENSMSPG00010009006	lncRNA gene	Chr18:81416229-81443322 (-)
WSB/EiJ	ENSIUOG00005008136	lncRNA gene	Chr18:80239266-80267617 (-)

Homology

• Gene Tree
  Gm50416
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28

• Ensembl
  ENSMUSG00000118175 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118175	Ensembl Gene Model | MGI Sequence Detail	33438	C57BL/6J
transcript	ENSMUST00000237450	Ensembl | MGI Sequence Detail	1456	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm50416:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154102	Chr18:83543416-83543430 (-)	46 bp