Gm50399 Gene Detail

Summary

• Symbol
  Gm50399
• Name
  predicted gene, 50399

• Feature Type
  lncRNA gene
• IDs
  MGI:6303309
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:35995136-36010644 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  347 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303309	lncRNA gene	Chr18:35995136-36010644 (+)
129S1/SvImJ	ENSMUSG00200045718	lncRNA gene	Chr18:32994172-33009230 (+)
A/J	ENSMUSG00195038462	lncRNA gene	Chr18:33161150-33176239 (+)
AKR/J	ENSMUSG00220017501	lncRNA gene	Chr18:33137206-33152262 (+)
BALB/cJ	ENSMUSG00180023156	lncRNA gene	Chr18:33610793-33625881 (+)
C3H/HeJ	ENSMUSG00175042175	lncRNA gene	Chr18:33117923-33133059 (+)
C57BL/6NJ	ENSMUSG00215027878	lncRNA gene	Chr18:32864269-32879334 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025569	lncRNA gene	Chr18:32773196-32788227 (+)
CBA/J	ENSMUSG00210021530	lncRNA gene	Chr18:33152927-33168014 (+)
DBA/2J	ENSMUSG00185021594	lncRNA gene	Chr18:33087490-33102577 (+)
FVB/NJ	ENSMUSG00205032624	lncRNA gene	Chr18:32799066-32814131 (+)
JF1/MsJ	ENSUMUG00000047936	lncRNA gene	Chr18:33245419-33260473 (+)
LP/J	ENSMUSG00230049342	lncRNA gene	Chr18:35190945-35206005 (+)
NOD/ShiLtJ	ENSMUSG00190022224	lncRNA gene	Chr18:32871744-32886868 (+)
NZO/HlLtJ	ENSMUSG00225046881	lncRNA gene	Chr18:35095761-35110819 (+)
PWK/PhJ	ENSLUMG00010012866	lncRNA gene	Chr18:33395967-33411001 (+)
SPRET/EiJ	ENSMSPG00010022068	lncRNA gene	Chr18:33445437-33460782 (+)
WSB/EiJ	ENSIUOG00005008052	lncRNA gene	Chr18:32858694-32873775 (+)

Homology

• Gene Tree
  Gm50399
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28

• Ensembl
  ENSMUSG00000117840 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117840	Ensembl Gene Model | MGI Sequence Detail	15509	C57BL/6J
transcript	ENSMUST00000235808	Ensembl | MGI Sequence Detail	1612	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;