Gm50392 Pseudogene Detail

Summary

• Symbol
  Gm50392
• Name
  predicted gene, 50392

• Feature Type
  pseudogene
• IDs
  MGI:6303296
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:33709521-33710184 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  183 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303296	pseudogene	Chr18:33709521-33710184 (+)
129S1/SvImJ	ENSMUSG00200044342	pseudogene	Chr18:30703848-30704513 (+)
A/J	ENSMUSG00195038593	pseudogene	Chr18:30880491-30881154 (+)
AKR/J	ENSMUSG00220017708	pseudogene	Chr18:30844135-30844800 (+)
BALB/cJ	ENSMUSG00180022928	pseudogene	Chr18:31323438-31324097 (+)
C3H/HeJ	ENSMUSG00175043069	pseudogene	Chr18:30838013-30838672 (+)
C57BL/6NJ	ENSMUSG00215033052	pseudogene	Chr18:30577577-30578240 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024753	pseudogene	Chr18:30470823-30471464 (+)
CBA/J	ENSMUSG00210021469	pseudogene	Chr18:30872435-30873098 (+)
DBA/2J	ENSMUSG00185021223	pseudogene	Chr18:30807027-30807690 (+)
FVB/NJ	ENSMUSG00205039231	pseudogene	Chr18:30530867-30531530 (+)
JF1/MsJ	ENSUMUG00000050959	pseudogene	Chr18:30923626-30924284 (+)
LP/J	ENSMUSG00230049110	pseudogene	Chr18:32900771-32901434 (+)
NOD/ShiLtJ	ENSMUSG00190022715	pseudogene	Chr18:30591837-30592496 (+)
NZO/HlLtJ	ENSMUSG00225047836	pseudogene	Chr18:32809292-32809955 (+)
PWK/PhJ	ENSLUMG00010012970	pseudogene	Chr18:31077651-31078302 (+)
SPRET/EiJ	ENSMSPG00010023682	pseudogene	Chr18:31142935-31143584 (+)
WSB/EiJ	ENSIUOG00005008589	pseudogene	Chr18:30591317-30591975 (+)

Homology

• Gene Tree
  Gm50392
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000117689 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117689	Ensembl Gene Model | MGI Sequence Detail	664	C57BL/6J
transcript	ENSMUST00000237469	Ensembl | MGI Sequence Detail	664	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;