Gm50389 Pseudogene Detail

Summary

• Symbol
  Gm50389
• Name
  predicted gene, 50389

• Feature Type
  pseudogene
• IDs
  MGI:6303293
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:87594332-87594538 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303293	pseudogene	Chr18:87594332-87594538 (+)
129S1/SvImJ	ENSMUSG00200015373	pseudogene	Chr18:84889868-84890074 (+)
A/J	ENSMUSG00195001328	pseudogene	Chr18:84888130-84888336 (+)
AKR/J	ENSMUSG00220016795	pseudogene	Chr18:84802593-84802799 (+)
BALB/cJ	ENSMUSG00180002768	pseudogene	Chr18:85440132-85440338 (+)
C3H/HeJ	ENSMUSG00175018797	pseudogene	Chr18:84992430-84992636 (+)
C57BL/6NJ	ENSMUSG00215004275	pseudogene	Chr18:84408518-84408724 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005483	pseudogene	Chr18:83923572-83923779 (+)
CBA/J	ENSMUSG00210018262	pseudogene	Chr18:84933170-84933376 (+)
DBA/2J	ENSMUSG00185004288	pseudogene	Chr18:84835797-84836003 (+)
FVB/NJ	ENSMUSG00205014036	pseudogene	Chr18:84234790-84234996 (+)
JF1/MsJ	ENSUMUG00000018195	pseudogene	Chr18:84699402-84699608 (+)
LP/J	ENSMUSG00230018415	pseudogene	Chr18:86953020-86953226 (+)
NOD/ShiLtJ	ENSMUSG00190003478	pseudogene	Chr18:84651902-84652108 (+)
NZO/HlLtJ	ENSMUSG00225023663	pseudogene	Chr18:86839944-86840150 (+)
PWK/PhJ	ENSLUMG00010004166	pseudogene	Chr18:85100945-85101151 (+)
SPRET/EiJ	ENSMSPG00010001295	pseudogene	Chr18:85591049-85591255 (+)
WSB/EiJ	ENSIUOG00005016518	pseudogene	Chr18:84320435-84320641 (+)

Homology

• Gene Tree
  Gm50389
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000117683 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117683	Ensembl Gene Model | MGI Sequence Detail	207	C57BL/6J
transcript	ENSMUST00000237348	Ensembl | MGI Sequence Detail	207	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;