Gm50368 Gene Detail

Summary

• Symbol
  Gm50368
• Name
  predicted gene, 50368

• Feature Type
  lncRNA gene
• IDs
  MGI:6303259
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:65111617-65134246 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  892 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303259	lncRNA gene	Chr18:65111617-65134246 (-)
129S1/SvImJ	ENSMUSG00200025405	lncRNA gene	Chr18:62299480-62322107 (-)
A/J	ENSMUSG00195034839	lncRNA gene	Chr18:62343993-62366612 (-)
AKR/J	ENSMUSG00220023345	lncRNA gene	Chr18:62307817-62330417 (-)
BALB/cJ	ENSMUSG00180012702	lncRNA gene	Chr18:62910974-62933596 (-)
C3H/HeJ	ENSMUSG00175010624	lncRNA gene	Chr18:62515304-62537920 (-)
C57BL/6NJ	ENSMUSG00215022799	lncRNA gene	Chr18:61851513-61874145 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016040	lncRNA gene	Chr18:61521226-61544346 (-)
CBA/J	ENSMUSG00210031480	lncRNA gene	Chr18:62473237-62495853 (-)
DBA/2J	ENSMUSG00185030745	lncRNA gene	Chr18:62378791-62401422 (-)
FVB/NJ	ENSMUSG00205014060	lncRNA gene	Chr18:61848381-61871012 (-)
JF1/MsJ	ENSUMUG00000043995	lncRNA gene	Chr18:62281681-62304791 (-)
LP/J	ENSMUSG00230039752	lncRNA gene	Chr18:64442251-64464870 (-)
NOD/ShiLtJ	ENSMUSG00190008321	lncRNA gene	Chr18:62117351-62139977 (-)
NZO/HlLtJ	ENSMUSG00225030673	lncRNA gene	Chr18:64328023-64350645 (-)
PWK/PhJ	ENSLUMG00010026956	lncRNA gene	Chr18:62683043-62705800 (-)
SPRET/EiJ	ENSMSPG00010040621	lncRNA gene	Chr18:62828645-62851609 (-)
WSB/EiJ	ENSIUOG00005006397	lncRNA gene	Chr18:61908104-61930730 (-)

Homology

• Gene Tree
  Gm50368
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000117895 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117895	Ensembl Gene Model | MGI Sequence Detail	22630	C57BL/6J
transcript	ENSMUST00000237218	Ensembl | MGI Sequence Detail	1343	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm50368:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr153683	Chr18:65132443-65132451 (-)	1,799 bp