Gm50366 Pseudogene Detail

Summary

• Symbol
  Gm50366
• Name
  predicted gene, 50366

• Feature Type
  pseudogene
• IDs
  MGI:6303256
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:55001172-55001605 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303256	pseudogene	Chr18:55001172-55001605 (+)
129S1/SvImJ	ENSMUSG00200033828	pseudogene	Chr18:52040830-52041263 (+)
A/J	ENSMUSG00195005724	pseudogene	Chr18:52188666-52189099 (+)
AKR/J	ENSMUSG00220016753	pseudogene	Chr18:52175919-52176352 (+)
BALB/cJ	ENSMUSG00180012454	pseudogene	Chr18:52756500-52756933 (+)
C3H/HeJ	ENSMUSG00175036340	pseudogene	Chr18:52370869-52371302 (+)
C57BL/6NJ	ENSMUSG00215039760	pseudogene	Chr18:51729387-51729820 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028034	pseudogene	Chr18:51583532-51583966 (+)
CBA/J	ENSMUSG00210032790	pseudogene	Chr18:52301109-52301542 (+)
DBA/2J	ENSMUSG00185015718	pseudogene	Chr18:52221150-52221583 (+)
FVB/NJ	ENSMUSG00205017757	pseudogene	Chr18:51664907-51665340 (+)
JF1/MsJ	ENSUMUG00000037474	pseudogene	Chr18:52140235-52140669 (+)
LP/J	ENSMUSG00230011961	pseudogene	Chr18:54220035-54220468 (+)
NOD/ShiLtJ	ENSMUSG00190035865	pseudogene	Chr18:51933554-51933987 (+)
NZO/HlLtJ	ENSMUSG00225035579	pseudogene	Chr18:54121954-54122387 (+)
PWK/PhJ	ENSLUMG00010008560	pseudogene	Chr18:52275076-52275509 (+)
SPRET/EiJ	ENSMSPG00010018285	pseudogene	Chr18:52655078-52655512 (+)
WSB/EiJ	ENSIUOG00005009679	pseudogene	Chr18:51866428-51866861 (+)

Homology

• Gene Tree
  Gm50366
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm50366
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118063 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118063	Ensembl Gene Model | MGI Sequence Detail	434	C57BL/6J
transcript	ENSMUST00000236532	Ensembl | MGI Sequence Detail	434	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67