Gm50361 Gene Detail

Summary

• Symbol
  Gm50361
• Name
  predicted gene, 50361

• Feature Type
  lncRNA gene
• IDs
  MGI:6303248
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:54609837-54616523 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  213 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303248	lncRNA gene	Chr18:54609837-54616523 (+)
129S1/SvImJ	ENSMUSG00200034075	lncRNA gene	Chr18:51646647-51652844 (+)
A/J	ENSMUSG00195005418	lncRNA gene	Chr18:51794494-51800691 (+)
AKR/J	ENSMUSG00220016358	lncRNA gene	Chr18:51781835-51788030 (+)
BALB/cJ	ENSMUSG00180012599	lncRNA gene	Chr18:52362472-52368668 (+)
C3H/HeJ	ENSMUSG00175037025	lncRNA gene	Chr18:51976850-51983046 (+)
C57BL/6NJ	ENSMUSG00215039652	lncRNA gene	Chr18:51337877-51344072 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027515	lncRNA gene	Chr18:51184511-51190605 (+)
CBA/J	ENSMUSG00210032872	lncRNA gene	Chr18:51909644-51915839 (+)
DBA/2J	ENSMUSG00185016034	lncRNA gene	Chr18:51829699-51835894 (+)
FVB/NJ	ENSMUSG00205018179	lncRNA gene	Chr18:51271454-51277649 (+)
JF1/MsJ	ENSUMUG00000035298	lncRNA gene	Chr18:51741047-51747141 (+)
LP/J	ENSMUSG00230011913	lncRNA gene	Chr18:53825904-53832101 (+)
NOD/ShiLtJ	ENSMUSG00190032739	lncRNA gene	Chr18:51539579-51545774 (+)
NZO/HlLtJ	ENSMUSG00225035546	lncRNA gene	Chr18:53727889-53734086 (+)
PWK/PhJ	ENSLUMG00010008640	lncRNA gene	Chr18:51880123-51886216 (+)
SPRET/EiJ	ENSMSPG00010018889	lncRNA gene	Chr18:52235353-52241578 (+)
WSB/EiJ	ENSIUOG00005009743	lncRNA gene	Chr18:51461753-51467951 (+)

Homology

• Gene Tree
  Gm50361
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm50361
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000117881 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117881	Ensembl Gene Model | MGI Sequence Detail	6687	C57BL/6J
transcript	ENSMUST00000237842	Ensembl | MGI Sequence Detail	1440	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67