Gm50341 Gene Detail

Summary

• Symbol
  Gm50341
• Name
  predicted gene, 50341

• Feature Type
  lncRNA gene
• IDs
  MGI:6303218
  NCBI Gene: 115489035
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:24533696-24534774 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  92 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303218	lncRNA gene	Chr19:24533000-24539715 (+)
129S1/SvImJ	ENSMUSG00200021141	lncRNA gene	Chr19:21262668-21263609 (+)
A/J	ENSMUSG00195036353	lncRNA gene	Chr19:21397184-21398125 (+)
AKR/J	ENSMUSG00220020308	lncRNA gene	Chr19:21416981-21417922 (+)
BALB/cJ	ENSMUSG00180014040	lncRNA gene	Chr19:21745829-21746770 (+)
C3H/HeJ	ENSMUSG00175025820	lncRNA gene	Chr19:21117325-21118266 (+)
C57BL/6NJ	ENSMUSG00215026227	lncRNA gene	Chr19:21144248-21145189 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018617	lncRNA gene	Chr19:21009722-21010663 (+)
CBA/J	ENSMUSG00210015103	lncRNA gene	Chr19:21348409-21349350 (+)
DBA/2J	ENSMUSG00185026399	lncRNA gene	Chr19:21734958-21735899 (+)
FVB/NJ	ENSMUSG00205013443	lncRNA gene	Chr19:21168782-21169723 (+)
JF1/MsJ	ENSUMUG00000040224	lncRNA gene	Chr19:21946292-21947233 (+)
LP/J	ENSMUSG00230029418	lncRNA gene	Chr19:22572511-22573452 (+)
NOD/ShiLtJ	ENSMUSG00190021858	lncRNA gene	Chr19:21110370-21111311 (+)
NZO/HlLtJ	ENSMUSG00225034473	lncRNA gene	Chr19:26323378-26324319 (+)
PWK/PhJ	ENSLUMG00010035840	lncRNA gene	Chr19:21293336-21294277 (+)
SPRET/EiJ	ENSMSPG00010037068	lncRNA gene	Chr19:21294527-21295468 (+)
WSB/EiJ	ENSIUOG00005028766	lncRNA gene	Chr19:20826678-20827619 (+)

Homology

• Gene Tree
  Gm50341
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000117979 (Evidence)
• NCBI Gene
  115489035

Representative Sequences			Length	Strain/Species
genomic	115489035	NCBI Gene Model | MGI Sequence Detail	1079	C57BL/6J
transcript	NR_169181	RefSeq | MGI Sequence Detail	456	ZRU/MplStud

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm50341:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155625	Chr19:24533690-24533701 (+)	0 bp