Gm50336 Gene Detail

Summary

• Symbol
  Gm50336
• Name
  predicted gene, 50336

• Feature Type
  lncRNA gene
• IDs
  MGI:6303208
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:34339360-34348433 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303208	lncRNA gene	Chr17:34339360-34348433 (+)
129S1/SvImJ	ENSMUSG00200054190	lncRNA gene	Chr17:30042642-30043232 (+)
A/J	ENSMUSG00195046571	lncRNA gene	Chr17:30907277-30907867 (+)
AKR/J	ENSMUSG00220053669	lncRNA gene	Chr17:29934919-29935509 (+)
BALB/cJ	ENSMUSG00180043696	lncRNA gene	Chr17:30295938-30296527 (+)
C3H/HeJ	ENSMUSG00175054007	lncRNA gene	Chr17:29821100-29821690 (+)
C57BL/6NJ	ENSMUSG00215054566	lncRNA gene	Chr17:29882817-29883407 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052024	lncRNA gene	Chr17:30866664-30867253 (+)
CBA/J	ENSMUSG00210051450	lncRNA gene	Chr17:29643201-29643791 (+)
DBA/2J	ENSMUSG00185054655	lncRNA gene	Chr17:32315229-32315818 (+)
FVB/NJ	ENSMUSG00205053792	lncRNA gene	Chr17:30172338-30172928 (+)
JF1/MsJ	ENSUMUG00000057957	lncRNA gene	Chr17:31577224-31577813 (+)
LP/J	ENSMUSG00230054806	lncRNA gene	Chr17:33440990-33441580 (+)
NOD/ShiLtJ	ENSMUSG00190054402	lncRNA gene	Chr17:29794822-29795411 (+)
NZO/HlLtJ	ENSMUSG00225055040	lncRNA gene	Chr17:35484126-35484716 (+)
PWK/PhJ	ENSLUMG00010053573	lncRNA gene	Chr17:29421282-29421871 (+)
SPRET/EiJ	ENSMSPG00010051023	lncRNA gene	Chr17:30565140-30565725 (+)
WSB/EiJ	ENSIUOG00005052273	lncRNA gene	Chr17:30495233-30495823 (+)

Homology

• Gene Tree
  Gm50336
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000117829 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117829	Ensembl Gene Model | MGI Sequence Detail	9074	C57BL/6J
transcript	ENSMUST00000343687	Ensembl | MGI Sequence Detail	781	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm50336:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143904	Chr17:34341653-34341695 (+)	2,314 bp
Tssr143905	Chr17:34341789-34341857 (+)	2,463 bp