Gm50334 Gene Detail

Summary

• Symbol
  Gm50334
• Name
  predicted gene, 50334

• Feature Type
  lncRNA gene
• IDs
  MGI:6303204
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr19:44302211-44305774 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  213 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303204	lncRNA gene	Chr19:44302211-44305774 (+)
129S1/SvImJ	ENSMUSG00200021642	lncRNA gene	Chr19:41013763-41017319 (+)
A/J	ENSMUSG00195018715	lncRNA gene	Chr19:41145155-41148717 (+)
AKR/J	ENSMUSG00220019528	lncRNA gene	Chr19:40940802-40944358 (+)
BALB/cJ	ENSMUSG00180021274	lncRNA gene	Chr19:41397539-41401101 (+)
C3H/HeJ	ENSMUSG00175006494	lncRNA gene	Chr19:40929821-40933376 (+)
C57BL/6NJ	ENSMUSG00215005113	lncRNA gene	Chr19:40992481-40996038 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017047	lncRNA gene	Chr19:40576031-40579591 (+)
CBA/J	ENSMUSG00210019098	lncRNA gene	Chr19:41009498-41013052 (+)
DBA/2J	ENSMUSG00185009423	lncRNA gene	Chr19:41521217-41524780 (+)
FVB/NJ	ENSMUSG00205039628	lncRNA gene	Chr19:40437280-40440839 (+)
JF1/MsJ	ENSUMUG00000048150	lncRNA gene	Chr19:41663375-41666964 (+)
LP/J	ENSMUSG00230025591	lncRNA gene	Chr19:42283704-42287260 (+)
NOD/ShiLtJ	ENSMUSG00190005760	lncRNA gene	Chr19:40870977-40874539 (+)
NZO/HlLtJ	ENSMUSG00225044464	lncRNA gene	Chr19:45877504-45881058 (+)
PWK/PhJ	ENSLUMG00010001320	lncRNA gene	Chr19:40832728-40836309 (+)
SPRET/EiJ	ENSMSPG00010007914	lncRNA gene	Chr19:40581154-40584680 (+)
WSB/EiJ	ENSIUOG00005006825	lncRNA gene	Chr19:40386695-40390263 (+)

Homology

• Gene Tree
  Gm50334
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29

• Ensembl
  ENSMUSG00000117957 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117957	Ensembl Gene Model | MGI Sequence Detail	3564	C57BL/6J
transcript	ENSMUST00000238052	Ensembl | MGI Sequence Detail	1181	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;