Gm50333 Gene Detail

Summary

• Symbol
  Gm50333
• Name
  predicted gene, 50333

• Feature Type
  lncRNA gene
• IDs
  MGI:6303202
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:34318903-34328797 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303202	lncRNA gene	Chr17:34318903-34328797 (+)
129S1/SvImJ	ENSMUSG00200054357	lncRNA gene	Chr17:30022002-30031896 (+)
A/J	ENSMUSG00195046806	lncRNA gene	Chr17:30886167-30896577 (+)
AKR/J	ENSMUSG00220053994	lncRNA gene	Chr17:29913811-29924220 (+)
BALB/cJ	ENSMUSG00180045904	lncRNA gene	Chr17:30274939-30285211 (+)
C3H/HeJ	ENSMUSG00175054161	lncRNA gene	Chr17:29799992-29810402 (+)
C57BL/6NJ	ENSMUSG00215054539	lncRNA gene	Chr17:29862175-29872069 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052421	lncRNA gene	Chr17:30845563-30855969 (+)
CBA/J	ENSMUSG00210051407	lncRNA gene	Chr17:29622093-29632503 (+)
DBA/2J	ENSMUSG00185055767	lncRNA gene	Chr17:32294232-32304503 (+)
FVB/NJ	ENSMUSG00205053742	lncRNA gene	Chr17:30151231-30161640 (+)
JF1/MsJ	ENSUMUG00000057831	lncRNA gene	Chr17:31556418-31566522 (+)
LP/J	ENSMUSG00230054779	lncRNA gene	Chr17:33420351-33430245 (+)
NOD/ShiLtJ	ENSMUSG00190054379	lncRNA gene	Chr17:29773825-29784096 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010053406	lncRNA gene	Chr17:29400261-29410563 (+)
SPRET/EiJ	ENSMSPG00010051346	lncRNA gene	Chr17:30544135-30554435 (+)
WSB/EiJ	ENSIUOG00005051825	lncRNA gene	Chr17:30474353-30484511 (+)

Homology

• Gene Tree
  Gm50333
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000117772 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117772	Ensembl Gene Model | MGI Sequence Detail	9895	C57BL/6J
transcript	ENSMUST00000237628	Ensembl | MGI Sequence Detail	397	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;