Gm50311 Gene Detail

Summary

• Symbol
  Gm50311
• Name
  predicted gene, 50311

• Feature Type
  lncRNA gene
• IDs
  MGI:6303164
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:84221049-84227799 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  251 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303164	lncRNA gene	Chr18:84221049-84227799 (+)
129S1/SvImJ	ENSMUSG00200015464	lncRNA gene	Chr18:81456156-81463009 (+)
A/J	ENSMUSG00195001351	lncRNA gene	Chr18:81531495-81538245 (+)
AKR/J	ENSMUSG00220016761	lncRNA gene	Chr18:81447287-81454037 (+)
BALB/cJ	ENSMUSG00180002604	lncRNA gene	Chr18:82098256-82105006 (+)
C3H/HeJ	ENSMUSG00175018878	lncRNA gene	Chr18:81645308-81652058 (+)
C57BL/6NJ	ENSMUSG00215027733	lncRNA gene	Chr18:81015155-81021905 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029305	lncRNA gene	Chr18:80559257-80566029 (+)
CBA/J	ENSMUSG00210018271	lncRNA gene	Chr18:81591584-81598334 (+)
DBA/2J	ENSMUSG00185004379	lncRNA gene	Chr18:81494080-81500830 (+)
FVB/NJ	ENSMUSG00205014116	lncRNA gene	Chr18:80900647-80907397 (+)
JF1/MsJ	ENSUMUG00000017992	lncRNA gene	Chr18:81347654-81354415 (+)
LP/J	ENSMUSG00230018441	lncRNA gene	Chr18:83545035-83551888 (+)
NOD/ShiLtJ	ENSMUSG00190003480	lncRNA gene	Chr18:81323345-81330158 (+)
NZO/HlLtJ	ENSMUSG00225023672	lncRNA gene	Chr18:83427198-83434021 (+)
PWK/PhJ	ENSLUMG00010004067	lncRNA gene	Chr18:81752575-81759856 (+)
SPRET/EiJ	ENSMSPG00010001328	lncRNA gene	Chr18:82125743-82132342 (+)
WSB/EiJ	ENSIUOG00005008542	lncRNA gene	Chr18:80942932-80949749 (+)

Homology

• Gene Tree
  Gm50311
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118385 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118385	Ensembl Gene Model | MGI Sequence Detail	6751	C57BL/6J
transcript	ENSMUST00000238064	Ensembl | MGI Sequence Detail	696	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;