Gm50298 Gene Detail

Summary

• Symbol
  Gm50298
• Name
  predicted gene, 50298

• Feature Type
  lncRNA gene
• IDs
  MGI:6303144
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:82299410-82301850 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  245 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303144	lncRNA gene	Chr18:82299410-82301850 (+)
129S1/SvImJ	ENSMUSG00200028897	lncRNA gene	Chr18:79510398-79512826 (+)
A/J	ENSMUSG00195004861	lncRNA gene	Chr18:79596610-79599036 (+)
AKR/J	ENSMUSG00220017387	lncRNA gene	Chr18:79519737-79522163 (+)
BALB/cJ	ENSMUSG00180013738	lncRNA gene	Chr18:80166918-80169344 (+)
C3H/HeJ	ENSMUSG00175013398	lncRNA gene	Chr18:79707167-79709595 (+)
C57BL/6NJ	ENSMUSG00215024734	lncRNA gene	Chr18:79093008-79095448 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030422	lncRNA gene	Chr18:78619305-78621736 (+)
CBA/J	ENSMUSG00210036459	lncRNA gene	Chr18:79657633-79660059 (+)
DBA/2J	ENSMUSG00185011690	lncRNA gene	Chr18:79562937-79565363 (+)
FVB/NJ	ENSMUSG00205017457	lncRNA gene	Chr18:78970993-78973417 (+)
JF1/MsJ	ENSUMUG00000035900	lncRNA gene	Chr18:79460334-79462750 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190022871	lncRNA gene	Chr18:79395051-79397491 (+)
NZO/HlLtJ	ENSMUSG00225034521	lncRNA gene	Chr18:81494749-81497189 (+)
PWK/PhJ	ENSLUMG00010007224	lncRNA gene	Chr18:79840715-79843139 (+)
SPRET/EiJ	ENSMSPG00010008997	lncRNA gene	Chr18:80211877-80214412 (+)
WSB/EiJ	ENSIUOG00005008476	lncRNA gene	Chr18:79022811-79025237 (+)

Homology

• Gene Tree
  Gm50298
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000118279 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118279	Ensembl Gene Model | MGI Sequence Detail	2441	C57BL/6J
transcript	ENSMUST00000237322	Ensembl | MGI Sequence Detail	670	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;