Gm50287 Gene Detail

Summary

• Symbol
  Gm50287
• Name
  predicted gene, 50287

• Feature Type
  lncRNA gene
• IDs
  MGI:6303125
  NCBI Gene: 115489013
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr19:58080246-58084463 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  290 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303125	lncRNA gene	Chr19:58072702-58089414 (-)
129S1/SvImJ	ENSMUSG00200015145	lncRNA gene	Chr19:54789798-54794060 (-)
A/J	ENSMUSG00195002650	lncRNA gene	Chr19:54964460-54968722 (-)
AKR/J	ENSMUSG00220018142	lncRNA gene	Chr19:54698885-54703102 (-)
BALB/cJ	ENSMUSG00180020077	lncRNA gene	Chr19:55188243-55192505 (-)
C3H/HeJ	ENSMUSG00175022989	lncRNA gene	Chr19:54726739-54731001 (-)
C57BL/6NJ	ENSMUSG00215026757	lncRNA gene	Chr19:54822456-54826673 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015629	lncRNA gene	Chr19:54372311-54376573 (-)
CBA/J	ENSMUSG00210021479	lncRNA gene	Chr19:54806000-54810262 (-)
DBA/2J	ENSMUSG00185028436	lncRNA gene	Chr19:55304857-55309119 (-)
FVB/NJ	ENSMUSG00205003722	lncRNA gene	Chr19:54220304-54224566 (-)
JF1/MsJ	ENSUMUG00000040854	lncRNA gene	Chr19:55486567-55490838 (-)
LP/J	ENSMUSG00230028128	lncRNA gene	Chr19:56071180-56075442 (-)
NOD/ShiLtJ	ENSMUSG00190014144	lncRNA gene	Chr19:54752969-54757186 (-)
NZO/HlLtJ	ENSMUSG00225025453	lncRNA gene	Chr19:59676733-59680950 (-)
PWK/PhJ	ENSLUMG00010018720	lncRNA gene	Chr19:54555810-54560080 (-)
SPRET/EiJ	ENSMSPG00010003417	lncRNA gene	Chr19:54409673-54413926 (-)
WSB/EiJ	ENSIUOG00005025398	lncRNA gene	Chr19:54168175-54172392 (-)

Homology

• Gene Tree
  Gm50287
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000117871 (Evidence)
• NCBI Gene
  115489013

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117871	Ensembl Gene Model | MGI Sequence Detail	4218	C57BL/6J
transcript	ENSMUST00000235250	Ensembl | MGI Sequence Detail	2491	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;