Gm50269 Gene Detail

Summary

• Symbol
  Gm50269
• Name
  predicted gene, 50269

• Feature Type
  lncRNA gene
• IDs
  MGI:6303095
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:26668362-26683131 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  735 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303095	lncRNA gene	Chr17:26668362-26683131 (-)
129S1/SvImJ	ENSMUSG00200054161	lncRNA gene	Chr17:22112618-22127454 (-)
A/J	ENSMUSG00195054460	lncRNA gene	Chr17:23132900-23147678 (-)
AKR/J	ENSMUSG00220053482	lncRNA gene	Chr17:22176617-22191449 (-)
BALB/cJ	ENSMUSG00180050687	lncRNA gene	Chr17:22410704-22425542 (-)
C3H/HeJ	ENSMUSG00175053930	lncRNA gene	Chr17:22168876-22183709 (-)
C57BL/6NJ	ENSMUSG00215054264	lncRNA gene	Chr17:22178002-22192772 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051706	lncRNA gene	Chr17:22771508-22786437 (-)
CBA/J	ENSMUSG00210051053	lncRNA gene	Chr17:22007737-22022572 (-)
DBA/2J	ENSMUSG00185054880	lncRNA gene	Chr17:24221080-24235860 (-)
FVB/NJ	ENSMUSG00205052844	lncRNA gene	Chr17:22480037-22494870 (-)
JF1/MsJ	ENSUMUG00000057674	lncRNA gene	Chr17:23674113-23689028 (-)
LP/J	ENSMUSG00230055067	lncRNA gene	Chr17:25617129-25631965 (-)
NOD/ShiLtJ	ENSMUSG00190054491	lncRNA gene	Chr17:22109813-22124590 (-)
NZO/HlLtJ	ENSMUSG00225054425	lncRNA gene	Chr17:27540162-27554940 (-)
PWK/PhJ	ENSLUMG00010053455	lncRNA gene	Chr17:21589812-21604689 (-)
SPRET/EiJ	ENSMSPG00010050131	lncRNA gene	Chr17:22916022-22930901 (-)
WSB/EiJ	ENSIUOG00005051931	lncRNA gene	Chr17:22867018-22881790 (-)

Homology

• Gene Tree
  Gm50269
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118232 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118232	Ensembl Gene Model | MGI Sequence Detail	14770	C57BL/6J
transcript	ENSMUST00000236943	Ensembl | MGI Sequence Detail	2338	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm50269:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146935	Chr17:26684072-26684109 (-)	-960 bp