Gm50258 Pseudogene Detail

Summary

• Symbol
  Gm50258
• Name
  predicted gene, 50258

• Feature Type
  pseudogene
• IDs
  MGI:6303080
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:68565864-68566248 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303080	pseudogene	Chr18:68565864-68566248 (+)
129S1/SvImJ	ENSMUSG00200026191	pseudogene	Chr18:65790516-65790900 (+)
A/J	ENSMUSG00195034576	pseudogene	Chr18:65811042-65811426 (+)
AKR/J	ENSMUSG00220023718	pseudogene	Chr18:65768174-65768558 (+)
BALB/cJ	ENSMUSG00180012510	pseudogene	Chr18:66378106-66378490 (+)
C3H/HeJ	ENSMUSG00175010858	pseudogene	Chr18:65971063-65971447 (+)
C57BL/6NJ	ENSMUSG00215022046	pseudogene	Chr18:65325854-65326238 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015817	pseudogene	Chr18:64990459-64990843 (+)
CBA/J	ENSMUSG00210032714	pseudogene	Chr18:65923769-65924153 (+)
DBA/2J	ENSMUSG00185030148	pseudogene	Chr18:65835189-65835573 (+)
FVB/NJ	ENSMUSG00205013046	pseudogene	Chr18:65303639-65304023 (+)
JF1/MsJ	ENSUMUG00000044362	pseudogene	Chr18:65778835-65779219 (+)
LP/J	ENSMUSG00230039133	pseudogene	Chr18:67921569-67921953 (+)
NOD/ShiLtJ	ENSMUSG00190008633	pseudogene	Chr18:65556444-65556828 (+)
NZO/HlLtJ	ENSMUSG00225030316	pseudogene	Chr18:67781883-67782267 (+)
PWK/PhJ	ENSLUMG00010028470	pseudogene	Chr18:66190828-66191212 (+)
SPRET/EiJ	ENSMSPG00010039204	pseudogene	Chr18:66332737-66333121 (+)
WSB/EiJ	ENSIUOG00005006274	pseudogene	Chr18:65387452-65387836 (+)

Homology

• Gene Tree
  Gm50258
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118288 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118288	Ensembl Gene Model | MGI Sequence Detail	385	C57BL/6J
transcript	ENSMUST00000236693	Ensembl | MGI Sequence Detail	385	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;