Gm50251 Gene Detail

Summary

• Symbol
  Gm50251
• Name
  predicted gene, 50251

• Feature Type
  lncRNA gene
• IDs
  MGI:6303067
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr19:4242108-4242781 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303067	lncRNA gene	Chr19:4242108-4242781 (-)
129S1/SvImJ	ENSMUSG00200052985	lncRNA gene	Chr19:1002630-1003303 (-)
A/J	ENSMUSG00195053821	lncRNA gene	Chr19:1393873-1394550 (-)
AKR/J	ENSMUSG00220051613	lncRNA gene	Chr19:1166808-1167483 (-)
BALB/cJ	ENSMUSG00180051288	lncRNA gene	Chr19:1768619-1769295 (-)
C3H/HeJ	ENSMUSG00175014217	lncRNA gene	Chr19:1013350-1014025 (-)
C57BL/6NJ	ENSMUSG00215046983	lncRNA gene	Chr19:1240937-1241611 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045077	lncRNA gene	Chr19:1147842-1148519 (-)
CBA/J	ENSMUSG00210050169	lncRNA gene	Chr19:1013652-1014325 (-)
DBA/2J	ENSMUSG00185052247	lncRNA gene	Chr19:1389962-1390635 (-)
FVB/NJ	ENSMUSG00205053498	lncRNA gene	Chr19:1391083-1391756 (-)
JF1/MsJ	ENSUMUG00000056103	lncRNA gene	Chr19:1375338-1376015 (-)
LP/J	ENSMUSG00230054216	lncRNA gene	Chr19:2308794-2309467 (-)
NOD/ShiLtJ	ENSMUSG00190052862	lncRNA gene	Chr19:934953-935628 (-)
NZO/HlLtJ	ENSMUSG00225027145	lncRNA gene	Chr19:6017643-6018316 (-)
PWK/PhJ	ENSLUMG00010008439	lncRNA gene	Chr19:1152071-1152747 (-)
SPRET/EiJ	ENSMSPG00010050442	lncRNA gene	Chr19:1132177-1132854 (-)
WSB/EiJ	ENSIUOG00005050827	lncRNA gene	Chr19:1019017-1019691 (-)

Homology

• Gene Tree
  Gm50251
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000117839 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117839	Ensembl Gene Model | MGI Sequence Detail	674	C57BL/6J
transcript	ENSMUST00000235517	Ensembl | MGI Sequence Detail	241	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;