Gm50236 Gene Detail

Summary

• Symbol
  Gm50236
• Name
  predicted gene, 50236

• Feature Type
  lncRNA gene
• IDs
  MGI:6303041
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr19:21185841-21189337 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  249 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303041	lncRNA gene	Chr19:21185841-21189337 (+)
129S1/SvImJ	ENSMUSG00200020814	lncRNA gene	Chr19:17933427-17936923 (+)
A/J	ENSMUSG00195019080	lncRNA gene	Chr19:18058062-18061558 (+)
AKR/J	ENSMUSG00220010862	lncRNA gene	Chr19:18028778-18032274 (+)
BALB/cJ	ENSMUSG00180019625	lncRNA gene	Chr19:18406398-18409894 (+)
C3H/HeJ	ENSMUSG00175004039	lncRNA gene	Chr19:17766992-17770488 (+)
C57BL/6NJ	ENSMUSG00215027302	lncRNA gene	Chr19:17793358-17796854 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008855	lncRNA gene	Chr19:17666817-17671037 (+)
CBA/J	ENSMUSG00210012953	lncRNA gene	Chr19:18006988-18010484 (+)
DBA/2J	ENSMUSG00185013982	lncRNA gene	Chr19:18393340-18396836 (+)
FVB/NJ	ENSMUSG00205004283	lncRNA gene	Chr19:17813088-17816584 (+)
JF1/MsJ	ENSUMUG00000036072	lncRNA gene	Chr19:18636760-18640982 (+)
LP/J	ENSMUSG00230022263	lncRNA gene	Chr19:19247830-19251326 (+)
NOD/ShiLtJ	ENSMUSG00190020643	lncRNA gene	Chr19:17775498-17778994 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010008794	lncRNA gene	Chr19:17950843-17955061 (+)
SPRET/EiJ	ENSMSPG00010018790	lncRNA gene	Chr19:17954822-17958389 (+)
WSB/EiJ	ENSIUOG00005007202	lncRNA gene	Chr19:17499203-17502699 (+)

Homology

• Gene Tree
  Gm50236
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000118090 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118090	Ensembl Gene Model | MGI Sequence Detail	3497	C57BL/6J
transcript	ENSMUST00000236069	Ensembl | MGI Sequence Detail	969	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;