Gm50232 Gene Detail

Summary

• Symbol
  Gm50232
• Name
  predicted gene, 50232

• Feature Type
  lncRNA gene
• IDs
  MGI:6303036
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr19:7341880-7347605 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  279 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303036	lncRNA gene	Chr19:7341880-7347605 (+)
129S1/SvImJ	ENSMUSG00200052808	lncRNA gene	Chr19:4067425-4073150 (+)
A/J	ENSMUSG00195053244	lncRNA gene	Chr19:4469355-4475083 (+)
AKR/J	ENSMUSG00220050437	lncRNA gene	Chr19:4238732-4244457 (+)
BALB/cJ	ENSMUSG00180051750	lncRNA gene	Chr19:4832876-4838602 (+)
C3H/HeJ	ENSMUSG00175015591	lncRNA gene	Chr19:4089345-4095070 (+)
C57BL/6NJ	ENSMUSG00215047979	lncRNA gene	Chr19:4307861-4313585 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043648	lncRNA gene	Chr19:4209683-4215491 (+)
CBA/J	ENSMUSG00210050658	lncRNA gene	Chr19:4092478-4098202 (+)
DBA/2J	ENSMUSG00185052389	lncRNA gene	Chr19:4468950-4474672 (+)
FVB/NJ	ENSMUSG00205053427	lncRNA gene	Chr19:4467326-4473080 (+)
JF1/MsJ	ENSUMUG00000056688	lncRNA gene	Chr19:4428937-4434886 (+)
LP/J	ENSMUSG00230054210	lncRNA gene	Chr19:5394139-5399864 (+)
NOD/ShiLtJ	ENSMUSG00190053427	lncRNA gene	Chr19:4000598-4006323 (+)
NZO/HlLtJ	ENSMUSG00225027129	lncRNA gene	Chr19:9102959-9108684 (+)
PWK/PhJ	ENSLUMG00010008485	lncRNA gene	Chr19:4192602-4198557 (+)
SPRET/EiJ	ENSMSPG00010050624	lncRNA gene	Chr19:4191002-4191573 (+)
WSB/EiJ	ENSIUOG00005051796	lncRNA gene	Chr19:4106802-4112553 (+)

Homology

• Gene Tree
  Gm50232
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000117743 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117743	Ensembl Gene Model | MGI Sequence Detail	5726	C57BL/6J
transcript	ENSMUST00000235544	Ensembl | MGI Sequence Detail	1404	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;