Gm50224 Pseudogene Detail

Summary

• Symbol
  Gm50224
• Name
  predicted gene, 50224

• Feature Type
  pseudogene
• IDs
  MGI:6303022
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:47942630-47943157 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303022	pseudogene	Chr18:47942630-47943157 (+)
129S1/SvImJ	ENSMUSG00200030967	pseudogene	Chr18:44952008-44952535 (+)
A/J	ENSMUSG00195025284	pseudogene	Chr18:45130637-45131164 (+)
AKR/J	ENSMUSG00220021709	pseudogene	Chr18:45080387-45080914 (+)
BALB/cJ	ENSMUSG00180007944	pseudogene	Chr18:45619182-45619709 (+)
C3H/HeJ	ENSMUSG00175011068	pseudogene	Chr18:45131492-45132019 (+)
C57BL/6NJ	ENSMUSG00215009569	pseudogene	Chr18:44828173-44828700 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014042	pseudogene	Chr18:44535512-44536039 (+)
CBA/J	ENSMUSG00210022544	pseudogene	Chr18:45183225-45183752 (+)
DBA/2J	ENSMUSG00185028753	pseudogene	Chr18:45083469-45083996 (+)
FVB/NJ	ENSMUSG00205015431	pseudogene	Chr18:44564442-44564969 (+)
JF1/MsJ	ENSUMUG00000031634	pseudogene	Chr18:45086164-45086699 (+)
LP/J	ENSMUSG00230029633	pseudogene	Chr18:47163344-47163871 (+)
NOD/ShiLtJ	ENSMUSG00190028308	pseudogene	Chr18:44865083-44865610 (+)
NZO/HlLtJ	ENSMUSG00225027771	pseudogene	Chr18:47048259-47048786 (+)
PWK/PhJ	ENSLUMG00010022315	pseudogene	Chr18:45212350-45212877 (+)
SPRET/EiJ	ENSMSPG00010013500	pseudogene	Chr18:45403879-45404406 (+)
WSB/EiJ	ENSIUOG00005009772	pseudogene	Chr18:44789275-44789802 (+)

Homology

• Gene Tree
  Gm50224
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm50224
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118110 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118110	Ensembl Gene Model | MGI Sequence Detail	528	C57BL/6J
transcript	ENSMUST00000237308	Ensembl | MGI Sequence Detail	528	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67