Gm50223 Gene Detail

Summary

• Symbol
  Gm50223
• Name
  predicted gene, 50223

• Feature Type
  lncRNA gene
• IDs
  MGI:6303020
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:47610571-47627478 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  587 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303020	lncRNA gene	Chr18:47610571-47627478 (+)
129S1/SvImJ	ENSMUSG00200030336	lncRNA gene	Chr18:44636080-44653104 (+)
A/J	ENSMUSG00195025357	lncRNA gene	Chr18:44814680-44831703 (+)
AKR/J	ENSMUSG00220021610	lncRNA gene	Chr18:44764422-44781441 (+)
BALB/cJ	ENSMUSG00180007828	lncRNA gene	Chr18:45297851-45314693 (+)
C3H/HeJ	ENSMUSG00175011265	lncRNA gene	Chr18:44815761-44832597 (+)
C57BL/6NJ	ENSMUSG00215008527	lncRNA gene	Chr18:44496132-44513041 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014319	lncRNA gene	Chr18:44221600-44238353 (+)
CBA/J	ENSMUSG00210022565	lncRNA gene	Chr18:44867528-44884366 (+)
DBA/2J	ENSMUSG00185028192	lncRNA gene	Chr18:44767757-44784577 (+)
FVB/NJ	ENSMUSG00205015280	lncRNA gene	Chr18:44248503-44265490 (+)
JF1/MsJ	ENSUMUG00000029303	lncRNA gene	Chr18:44776483-44793539 (+)
LP/J	ENSMUSG00230029948	lncRNA gene	Chr18:46847448-46864466 (+)
NOD/ShiLtJ	ENSMUSG00190029045	lncRNA gene	Chr18:44549142-44566166 (+)
NZO/HlLtJ	ENSMUSG00225027850	lncRNA gene	Chr18:46719150-46736064 (+)
PWK/PhJ	ENSLUMG00010022030	lncRNA gene	Chr18:44895703-44912467 (+)
SPRET/EiJ	ENSMSPG00010013606	lncRNA gene	Chr18:45062999-45080241 (+)
WSB/EiJ	ENSIUOG00005009880	lncRNA gene	Chr18:44473289-44490149 (+)

Homology

• Gene Tree
  Gm50223
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm50223
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118180 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118180	Ensembl Gene Model | MGI Sequence Detail	16908	C57BL/6J
transcript	ENSMUST00000236646	Ensembl | MGI Sequence Detail	1838	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67