Gm50214 Gene Detail

Summary

• Symbol
  Gm50214
• Name
  predicted gene, 50214

• Feature Type
  lncRNA gene
• IDs
  MGI:6303004
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:42720406-42753967 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1128 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6303004	lncRNA gene	Chr18:42720406-42753967 (+)
129S1/SvImJ	ENSMUSG00200045943	lncRNA gene	Chr18:39749172-39782721 (+)
A/J	ENSMUSG00195037568	lncRNA gene	Chr18:39908168-39941661 (+)
AKR/J	ENSMUSG00220017559	lncRNA gene	Chr18:39868574-39902120 (+)
BALB/cJ	ENSMUSG00180022202	lncRNA gene	Chr18:40353595-40387095 (+)
C3H/HeJ	ENSMUSG00175040239	lncRNA gene	Chr18:39854671-39888157 (+)
C57BL/6NJ	ENSMUSG00215033360	lncRNA gene	Chr18:39598438-39632010 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025433	lncRNA gene	Chr18:39435482-39470826 (+)
CBA/J	ENSMUSG00210021764	lncRNA gene	Chr18:39919321-39952810 (+)
DBA/2J	ENSMUSG00185020812	lncRNA gene	Chr18:39828127-39861615 (+)
FVB/NJ	ENSMUSG00205037943	lncRNA gene	Chr18:39482981-39516523 (+)
JF1/MsJ	ENSUMUG00000051266	lncRNA gene	Chr18:39975819-39978235 (+)
LP/J	ENSMUSG00230028667	lncRNA gene	Chr18:41939698-41973243 (+)
NOD/ShiLtJ	ENSMUSG00190023551	lncRNA gene	Chr18:39615771-39649285 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010013743	lncRNA gene	Chr18:40081460-40115037 (+)
SPRET/EiJ	ENSMSPG00010024827	lncRNA gene	Chr18:40207060-40239024 (+)
WSB/EiJ	ENSIUOG00005008178	lncRNA gene	Chr18:39575857-39609392 (+)

Homology

• Gene Tree
  Gm50214
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000117719 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117719	Ensembl Gene Model | MGI Sequence Detail	33562	C57BL/6J
transcript	ENSMUST00000235923	Ensembl | MGI Sequence Detail	705	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;