Gm50211 Gene Detail

Summary

• Symbol
  Gm50211
• Name
  predicted gene, 50211

• Feature Type
  lncRNA gene
• IDs
  MGI:6302999
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr18:80748405-80750975 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6302999	lncRNA gene	Chr18:80748405-80750975 (+)
129S1/SvImJ	ENSMUSG00200029862	lncRNA gene	Chr18:77953022-77955592 (+)
A/J	ENSMUSG00195005229	lncRNA gene	Chr18:78050089-78052658 (+)
AKR/J	ENSMUSG00220017446	lncRNA gene	Chr18:77981310-77983919 (+)
BALB/cJ	ENSMUSG00180013612	lncRNA gene	Chr18:78620289-78622858 (+)
C3H/HeJ	ENSMUSG00175013536	lncRNA gene	Chr18:78165728-78168298 (+)
C57BL/6NJ	ENSMUSG00215031091	lncRNA gene	Chr18:77527955-77530524 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029835	lncRNA gene	Chr18:77076489-77079095 (+)
CBA/J	ENSMUSG00210037660	lncRNA gene	Chr18:78116290-78118860 (+)
DBA/2J	ENSMUSG00185011599	lncRNA gene	Chr18:78021548-78024118 (+)
FVB/NJ	ENSMUSG00205018740	lncRNA gene	Chr18:77430461-77433031 (+)
JF1/MsJ	ENSUMUG00000038218	lncRNA gene	Chr18:77919784-77922393 (+)
LP/J	ENSMUSG00230013711	lncRNA gene	Chr18:80059284-80061854 (+)
NOD/ShiLtJ	ENSMUSG00190024589	lncRNA gene	Chr18:77822442-77825011 (+)
NZO/HlLtJ	ENSMUSG00225034312	lncRNA gene	Chr18:79938987-79941596 (+)
PWK/PhJ	ENSLUMG00010007235	lncRNA gene	Chr18:78309132-78311741 (+)
SPRET/EiJ	ENSMSPG00010009975	lncRNA gene	Chr18:78672153-78674756 (+)
WSB/EiJ	ENSIUOG00005008621	lncRNA gene	Chr18:77481377-77483947 (+)

Homology

• Gene Tree
  Gm50211
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118265 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118265	Ensembl Gene Model | MGI Sequence Detail	2571	C57BL/6J
transcript	ENSMUST00000237404	Ensembl | MGI Sequence Detail	409	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm50211:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152117	Chr18:80748239-80748244 (+)	-163 bp
Tssr152118	Chr18:80750442-80750454 (+)	2,043 bp
Tssr152119	Chr18:80750477-80750484 (+)	2,076 bp
Tssr152120	Chr18:80750487-80750501 (+)	2,089 bp