Gm50209 Gene Detail

Summary

• Symbol
  Gm50209
• Name
  predicted gene, 50209

• Feature Type
  lncRNA gene
• IDs
  MGI:6302995
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr18:80512072-80519751 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  351 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6302995	lncRNA gene	Chr18:80512072-80519751 (+)
129S1/SvImJ	ENSMUSG00200029887	lncRNA gene	Chr18:77729362-77737041 (+)
A/J	ENSMUSG00195005233	lncRNA gene	Chr18:77813673-77821357 (+)
AKR/J	ENSMUSG00220017450	lncRNA gene	Chr18:77756449-77764167 (+)
BALB/cJ	ENSMUSG00180013615	lncRNA gene	Chr18:78383892-78391576 (+)
C3H/HeJ	ENSMUSG00175013545	lncRNA gene	Chr18:77929381-77937060 (+)
C57BL/6NJ	ENSMUSG00215031134	lncRNA gene	Chr18:77291628-77299307 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029846	lncRNA gene	Chr18:76845767-76853342 (+)
CBA/J	ENSMUSG00210037723	lncRNA gene	Chr18:77879952-77887631 (+)
DBA/2J	ENSMUSG00185011609	lncRNA gene	Chr18:77785201-77792880 (+)
FVB/NJ	ENSMUSG00205018754	lncRNA gene	Chr18:77206767-77214449 (+)
JF1/MsJ	ENSUMUG00000038243	lncRNA gene	Chr18:77695176-77702894 (+)
LP/J	ENSMUSG00230013571	lncRNA gene	Chr18:79835628-79843307 (+)
NOD/ShiLtJ	ENSMUSG00190024605	lncRNA gene	Chr18:77585986-77593670 (+)
NZO/HlLtJ	ENSMUSG00225034641	lncRNA gene	Chr18:79714153-79721871 (+)
PWK/PhJ	ENSLUMG00010007236	lncRNA gene	Chr18:78084424-78092179 (+)
SPRET/EiJ	ENSMSPG00010009990	lncRNA gene	Chr18:78450034-78455617 (+)
WSB/EiJ	ENSIUOG00005008628	lncRNA gene	Chr18:77262256-77269940 (+)

Homology

• Gene Tree
  Gm50209
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118070 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118070	Ensembl Gene Model | MGI Sequence Detail	7680	C57BL/6J
transcript	ENSMUST00000235737	Ensembl | MGI Sequence Detail	1290	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm50209:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152107	Chr18:80511393-80511422 (+)	-664 bp
Tssr152108	Chr18:80512093-80512138 (+)	44 bp