Gm50197 Pseudogene Detail

Summary

• Symbol
  Gm50197
• Name
  predicted gene, 50197

• Feature Type
  pseudogene
• IDs
  MGI:6302976
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:77601136-77601329 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6302976	pseudogene	Chr18:77601136-77601329 (+)
129S1/SvImJ	ENSMUSG00200030084	pseudogene	Chr18:74830631-74830824 (+)
A/J	ENSMUSG00195005061	pseudogene	Chr18:74889202-74889395 (+)
AKR/J	ENSMUSG00220017733	pseudogene	Chr18:74830960-74831153 (+)
BALB/cJ	ENSMUSG00180013915	pseudogene	Chr18:75459707-75459900 (+)
C3H/HeJ	ENSMUSG00175013069	pseudogene	Chr18:75011419-75011612 (+)
C57BL/6NJ	ENSMUSG00215028106	pseudogene	Chr18:74367265-74367458 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030176	pseudogene	Chr18:73906289-73906482 (+)
CBA/J	ENSMUSG00210038192	pseudogene	Chr18:74968712-74968905 (+)
DBA/2J	ENSMUSG00185011594	pseudogene	Chr18:74874288-74874481 (+)
FVB/NJ	ENSMUSG00205017539	pseudogene	Chr18:74492813-74493006 (+)
JF1/MsJ	ENSUMUG00000038820	pseudogene	Chr18:74787161-74787354 (+)
LP/J	ENSMUSG00230013836	pseudogene	Chr18:76937080-76937273 (+)
NOD/ShiLtJ	ENSMUSG00190023703	pseudogene	Chr18:74631934-74632127 (+)
NZO/HlLtJ	ENSMUSG00225034743	pseudogene	Chr18:76806052-76806245 (+)
PWK/PhJ	ENSLUMG00010007042	pseudogene	Chr18:75196968-75197161 (+)
SPRET/EiJ	ENSMSPG00010009654	pseudogene	Chr18:75461174-75461366 (+)
WSB/EiJ	ENSIUOG00005008662	pseudogene	Chr18:74360012-74360205 (+)

Homology

• Gene Tree
  Gm50197
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000117855 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117855	Ensembl Gene Model | MGI Sequence Detail	194	C57BL/6J
transcript	ENSMUST00000236419	Ensembl | MGI Sequence Detail	194	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;