Gm50194 Gene Detail

Summary

• Symbol
  Gm50194
• Name
  predicted gene, 50194

• Feature Type
  lncRNA gene
• IDs
  MGI:6302970
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr19:43516718-43554468 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1208 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6302970	lncRNA gene	Chr19:43516718-43554468 (+)
129S1/SvImJ	ENSMUSG00200021657	lncRNA gene	Chr19:40240719-40277571 (+)
A/J	ENSMUSG00195017215	lncRNA gene	Chr19:40347991-40388683 (+)
AKR/J	ENSMUSG00220019042	lncRNA gene	Chr19:40160168-40197039 (+)
BALB/cJ	ENSMUSG00180022901	lncRNA gene	Chr19:40600413-40641100 (+)
C3H/HeJ	ENSMUSG00175006498	lncRNA gene	Chr19:40150848-40187657 (+)
C57BL/6NJ	ENSMUSG00215032421	lncRNA gene	Chr19:40206405-40244131 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015785	lncRNA gene	Chr19:39796635-39836145 (+)
CBA/J	ENSMUSG00210019064	lncRNA gene	Chr19:40230528-40267349 (+)
DBA/2J	ENSMUSG00185009011	lncRNA gene	Chr19:40724124-40764812 (+)
FVB/NJ	ENSMUSG00205007785	lncRNA gene	Chr19:39664162-39701023 (+)
JF1/MsJ	ENSUMUG00000044257	lncRNA gene	Chr19:40889221-40927435 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190011287	lncRNA gene	Chr19:40073917-40114620 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010001278	lncRNA gene	Chr19:40056258-40094135 (+)
SPRET/EiJ	ENSMSPG00010025046	lncRNA gene	Chr19:39801278-39839911 (+)
WSB/EiJ	ENSIUOG00005039055	lncRNA gene	Chr19:39605532-39643040 (+)

Homology

• Gene Tree
  Gm50194
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000118221 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118221	Ensembl Gene Model | MGI Sequence Detail	37751	C57BL/6J
transcript	ENSMUST00000236043	Ensembl | MGI Sequence Detail	2057	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm50194:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr156513	Chr19:43516764-43516771 (+)	50 bp
Tssr156514	Chr19:43516779-43516790 (+)	67 bp
Tssr156515	Chr19:43516799-43516812 (+)	88 bp