Gm50189 Pseudogene Detail

Summary

• Symbol
  Gm50189
• Name
  predicted gene, 50189

• Feature Type
  pseudogene
• IDs
  MGI:6302964
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr19:5308778-5308990 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  90 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6302964	pseudogene	Chr19:5308778-5308990 (+)
129S1/SvImJ	ENSMUSG00200053258	pseudogene	Chr19:2069151-2069363 (+)
A/J	ENSMUSG00195054076	pseudogene	Chr19:2464532-2464744 (+)
AKR/J	ENSMUSG00220051516	pseudogene	Chr19:2237644-2237856 (+)
BALB/cJ	ENSMUSG00180051438	pseudogene	Chr19:2839268-2839480 (+)
C3H/HeJ	ENSMUSG00175014916	pseudogene	Chr19:2089476-2089688 (+)
C57BL/6NJ	ENSMUSG00215047239	pseudogene	Chr19:2307338-2307550 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044939	pseudogene	Chr19:2228683-2228895 (+)
CBA/J	ENSMUSG00210050442	pseudogene	Chr19:2089802-2090014 (+)
DBA/2J	ENSMUSG00185052536	pseudogene	Chr19:2466274-2466486 (+)
FVB/NJ	ENSMUSG00205052352	pseudogene	Chr19:2469651-2469863 (+)
JF1/MsJ	ENSUMUG00000056290	pseudogene	Chr19:2446616-2446823 (+)
LP/J	ENSMUSG00230054302	pseudogene	Chr19:3376087-3376299 (+)
NOD/ShiLtJ	ENSMUSG00190053208	pseudogene	Chr19:1999038-1999250 (+)
NZO/HlLtJ	ENSMUSG00225026828	pseudogene	Chr19:7084848-7085060 (+)
PWK/PhJ	ENSLUMG00010008909	pseudogene	Chr19:2219472-2219679 (+)
SPRET/EiJ	ENSMSPG00010051557	pseudogene	Chr19:2205845-2206057 (+)
WSB/EiJ	ENSIUOG00005050986	pseudogene	Chr19:2100341-2100553 (+)

Homology

• Gene Tree
  Gm50189
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118104 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118104	Ensembl Gene Model | MGI Sequence Detail	213	C57BL/6J
transcript	ENSMUST00000235422	Ensembl | MGI Sequence Detail	213	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;