Gm50177 Pseudogene Detail

Summary

• Symbol
  Gm50177
• Name
  predicted gene, 50177

• Feature Type
  pseudogene
• IDs
  MGI:6302948
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:79713097-79713408 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6302948	pseudogene	Chr18:79713097-79713408 (+)
129S1/SvImJ	ENSMUSG00200029079	pseudogene	Chr18:76935257-76935568 (+)
A/J	ENSMUSG00195005120	pseudogene	Chr18:77009787-77010098 (+)
AKR/J	ENSMUSG00220018037	pseudogene	Chr18:76951332-76951643 (+)
BALB/cJ	ENSMUSG00180013446	pseudogene	Chr18:77580088-77580399 (+)
C3H/HeJ	ENSMUSG00175013525	pseudogene	Chr18:77123681-77123992 (+)
C57BL/6NJ	ENSMUSG00215026910	pseudogene	Chr18:76482470-76482781 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028672	pseudogene	Chr18:76015094-76015405 (+)
CBA/J	ENSMUSG00210037438	pseudogene	Chr18:77080947-77081258 (+)
DBA/2J	ENSMUSG00185011673	pseudogene	Chr18:76985934-76986245 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000033818	pseudogene	Chr18:76917884-76918195 (+)
LP/J	ENSMUSG00230014718	pseudogene	Chr18:79041608-79041919 (+)
NOD/ShiLtJ	ENSMUSG00190023949	pseudogene	Chr18:76744379-76744690 (+)
NZO/HlLtJ	ENSMUSG00225035253	pseudogene	Chr18:78943597-78943908 (+)
PWK/PhJ	ENSLUMG00010006905	pseudogene	Chr18:77303208-77303519 (+)
SPRET/EiJ	ENSMSPG00010010119	pseudogene	Chr18:77644880-77645191 (+)
WSB/EiJ	ENSIUOG00005007872	pseudogene	Chr18:76460352-76460663 (+)

Homology

• Gene Tree
  Gm50177
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000117787 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117787	Ensembl Gene Model | MGI Sequence Detail	312	C57BL/6J
transcript	ENSMUST00000236834	Ensembl | MGI Sequence Detail	312	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;