Gm50147 Gene Detail

Summary

• Symbol
  Gm50147
• Name
  predicted gene, 50147

• Feature Type
  lncRNA gene
• IDs
  MGI:6302902
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:36212827-36233796 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  709 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6302902	lncRNA gene	Chr19:36212827-36233796 (+)
129S1/SvImJ	ENSMUSG00200032003	lncRNA gene	Chr19:32998594-33003212 (+)
A/J	ENSMUSG00195011806	lncRNA gene	Chr19:33119537-33124155 (+)
AKR/J	ENSMUSG00220019188	lncRNA gene	Chr19:33003391-33008010 (+)
BALB/cJ	ENSMUSG00180032814	lncRNA gene	Chr19:33448319-33452937 (+)
C3H/HeJ	ENSMUSG00175041609	lncRNA gene	Chr19:32875599-32880217 (+)
C57BL/6NJ	ENSMUSG00215034321	lncRNA gene	Chr19:32893489-32898098 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015838	lncRNA gene	Chr19:32536179-32540811 (+)
CBA/J	ENSMUSG00210037863	lncRNA gene	Chr19:32954872-32959490 (+)
DBA/2J	ENSMUSG00185034608	lncRNA gene	Chr19:33475032-33479650 (+)
FVB/NJ	ENSMUSG00205008009	lncRNA gene	Chr19:32719886-32724501 (+)
JF1/MsJ	ENSUMUG00000050392	lncRNA gene	Chr19:33607256-33611936 (+)
LP/J	ENSMUSG00230036475	lncRNA gene	Chr19:34285985-34290603 (+)
NOD/ShiLtJ	ENSMUSG00190011993	lncRNA gene	Chr19:32858907-32863525 (+)
NZO/HlLtJ	ENSMUSG00225029616	lncRNA gene	Chr19:37842727-37847345 (+)
PWK/PhJ	ENSLUMG00010001460	lncRNA gene	Chr19:32987078-32991776 (+)
SPRET/EiJ	ENSMSPG00010025316	lncRNA gene	Chr19:32698750-32703431 (+)
WSB/EiJ	ENSIUOG00005038247	lncRNA gene	Chr19:32362590-32367208 (+)

Homology

• Gene Tree
  Gm50147
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000118032 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118032	Ensembl Gene Model | MGI Sequence Detail	20970	C57BL/6J
transcript	ENSMUST00000257231	Ensembl | MGI Sequence Detail	1570	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm50147:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr156174	Chr19:36212872-36212881 (+)	50 bp