Gm50145 Gene Detail

Summary

• Symbol
  Gm50145
• Name
  predicted gene, 50145

• Feature Type
  lncRNA gene
• IDs
  MGI:6302898
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:35622140-35626542 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  160 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6302898	lncRNA gene	Chr18:35622140-35626542 (+)
129S1/SvImJ	ENSMUSG00200045668	lncRNA gene	Chr18:32620923-32624911 (+)
A/J	ENSMUSG00195039199	lncRNA gene	Chr18:32787629-32791617 (+)
AKR/J	ENSMUSG00220017538	lncRNA gene	Chr18:32763937-32767925 (+)
BALB/cJ	ENSMUSG00180023659	lncRNA gene	Chr18:33237260-33241248 (+)
C3H/HeJ	ENSMUSG00175039749	lncRNA gene	Chr18:32744826-32748814 (+)
C57BL/6NJ	ENSMUSG00215034985	lncRNA gene	Chr18:32491014-32495002 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024826	lncRNA gene	Chr18:32395246-32398293 (+)
CBA/J	ENSMUSG00210021869	lncRNA gene	Chr18:32779426-32783414 (+)
DBA/2J	ENSMUSG00185021344	lncRNA gene	Chr18:32713998-32717986 (+)
FVB/NJ	ENSMUSG00205035060	lncRNA gene	Chr18:32425812-32429800 (+)
JF1/MsJ	ENSUMUG00000046264	lncRNA gene	Chr18:32869602-32873588 (+)
LP/J	ENSMUSG00230049369	lncRNA gene	Chr18:34817737-34821725 (+)
NOD/ShiLtJ	ENSMUSG00190021946	lncRNA gene	Chr18:32498652-32502640 (+)
NZO/HlLtJ	ENSMUSG00225046918	lncRNA gene	Chr18:34722534-34726522 (+)
PWK/PhJ	ENSLUMG00010013376	lncRNA gene	Chr18:33014667-33018654 (+)
SPRET/EiJ	ENSMSPG00010023967	lncRNA gene	Chr18:33065732-33069703 (+)
WSB/EiJ	ENSIUOG00005007937	lncRNA gene	Chr18:32485409-32489397 (+)

Homology

• Gene Tree
  Gm50145
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000117731 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117731	Ensembl Gene Model | MGI Sequence Detail	4403	C57BL/6J
transcript	ENSMUST00000237123	Ensembl | MGI Sequence Detail	952	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;