Gm50122 Pseudogene Detail

Summary

• Symbol
  Gm50122
• Name
  predicted gene, 50122

• Feature Type
  pseudogene
• IDs
  MGI:6302863
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:38052871-38053188 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  86 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6302863	pseudogene	Chr18:38052871-38053188 (+)
129S1/SvImJ	ENSMUSG00200044696	pseudogene	Chr18:35052250-35052567 (+)
A/J	ENSMUSG00195038754	pseudogene	Chr18:35202901-35203218 (+)
AKR/J	ENSMUSG00220017487	pseudogene	Chr18:35172892-35173209 (+)
BALB/cJ	ENSMUSG00180020849	pseudogene	Chr18:35652550-35652867 (+)
C3H/HeJ	ENSMUSG00175041845	pseudogene	Chr18:35167860-35168177 (+)
C57BL/6NJ	ENSMUSG00215029105	pseudogene	Chr18:34922438-34922755 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024039	pseudogene	Chr18:34783624-34783942 (+)
CBA/J	ENSMUSG00210021935	pseudogene	Chr18:35194576-35194893 (+)
DBA/2J	ENSMUSG00185020603	pseudogene	Chr18:35129184-35129501 (+)
FVB/NJ	ENSMUSG00205034665	pseudogene	Chr18:34831197-34831514 (+)
JF1/MsJ	ENSUMUG00000050086	pseudogene	Chr18:35263982-35264299 (+)
LP/J	ENSMUSG00230048616	pseudogene	Chr18:37246406-37246723 (+)
NOD/ShiLtJ	ENSMUSG00190023311	pseudogene	Chr18:34916188-34916505 (+)
NZO/HlLtJ	ENSMUSG00225047361	pseudogene	Chr18:37153549-37153867 (+)
PWK/PhJ	ENSLUMG00010013505	pseudogene	Chr18:35407524-35407836 (+)
SPRET/EiJ	ENSMSPG00010023215	pseudogene	Chr18:35442204-35442521 (+)
WSB/EiJ	ENSIUOG00005008617	pseudogene	Chr18:34909003-34909320 (+)

Homology

• Gene Tree
  Gm50122
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000117686 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117686	Ensembl Gene Model | MGI Sequence Detail	318	C57BL/6J
transcript	ENSMUST00000236273	Ensembl | MGI Sequence Detail	318	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;