Gm50116 Pseudogene Detail

Summary

• Symbol
  Gm50116
• Name
  predicted gene, 50116

• Feature Type
  pseudogene
• IDs
  MGI:6302856
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr19:34781662-34782159 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  148 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6302856	pseudogene	Chr19:34781662-34782159 (+)
129S1/SvImJ	ENSMUSG00200032560	pseudogene	Chr19:31550243-31550740 (+)
A/J	ENSMUSG00195011923	pseudogene	Chr19:31669580-31670077 (+)
AKR/J	ENSMUSG00220018818	pseudogene	Chr19:31564457-31564954 (+)
BALB/cJ	ENSMUSG00180033549	pseudogene	Chr19:31998418-31998915 (+)
C3H/HeJ	ENSMUSG00175045269	pseudogene	Chr19:31418146-31418643 (+)
C57BL/6NJ	ENSMUSG00215032344	pseudogene	Chr19:31444847-31445344 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016071	pseudogene	Chr19:31074248-31074745 (+)
CBA/J	ENSMUSG00210035699	pseudogene	Chr19:31495497-31495994 (+)
DBA/2J	ENSMUSG00185033247	pseudogene	Chr19:32026451-32026948 (+)
FVB/NJ	ENSMUSG00205007713	pseudogene	Chr19:31246883-31247380 (+)
JF1/MsJ	ENSUMUG00000050648	pseudogene	Chr19:32174983-32175483 (+)
LP/J	ENSMUSG00230036164	pseudogene	Chr19:32837607-32838104 (+)
NOD/ShiLtJ	ENSMUSG00190012043	pseudogene	Chr19:31396402-31396899 (+)
NZO/HlLtJ	ENSMUSG00225029531	pseudogene	Chr19:36381684-36382181 (+)
PWK/PhJ	ENSLUMG00010001255	pseudogene	Chr19:31545023-31545523 (+)
SPRET/EiJ	ENSMSPG00010023002	pseudogene	Chr19:31202256-31202746 (+)
WSB/EiJ	ENSIUOG00005038414	pseudogene	Chr19:30890459-30890956 (+)

Homology

• Gene Tree
  Gm50116
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000117945 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117945	Ensembl Gene Model | MGI Sequence Detail	498	C57BL/6J
transcript	ENSMUST00000237604	Ensembl | MGI Sequence Detail	498	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;