Gm50107 Gene Detail

Summary

• Symbol
  Gm50107
• Name
  predicted gene, 50107

• Feature Type
  lncRNA gene
• IDs
  MGI:6302841
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:31786137-31787828 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6302841	lncRNA gene	Chr17:31786137-31787828 (+)
129S1/SvImJ	ENSMUSG00200054241	lncRNA gene	Chr17:27472524-27474215 (+)
A/J	ENSMUSG00195054502	lncRNA gene	Chr17:28405687-28407377 (+)
AKR/J	ENSMUSG00220053772	lncRNA gene	Chr17:27433709-27435399 (+)
BALB/cJ	ENSMUSG00180051229	lncRNA gene	Chr17:27748083-27749774 (+)
C3H/HeJ	ENSMUSG00175054072	lncRNA gene	Chr17:27314868-27316558 (+)
C57BL/6NJ	ENSMUSG00215054682	lncRNA gene	Chr17:27304101-27305792 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050352	lncRNA gene	Chr17:28308746-28310434 (+)
CBA/J	ENSMUSG00210051237	lncRNA gene	Chr17:27141797-27143487 (+)
DBA/2J	ENSMUSG00185054640	lncRNA gene	Chr17:29758543-29760234 (+)
FVB/NJ	ENSMUSG00205053390	lncRNA gene	Chr17:27613930-27615626 (+)
JF1/MsJ	ENSUMUG00000057933	lncRNA gene	Chr17:29049762-29051459 (+)
LP/J	ENSMUSG00230054864	lncRNA gene	Chr17:30871046-30872737 (+)
NOD/ShiLtJ	ENSMUSG00190054243	lncRNA gene	Chr17:27264182-27265872 (+)
NZO/HlLtJ	ENSMUSG00225055079	lncRNA gene	Chr17:32908030-32909721 (+)
PWK/PhJ	ENSLUMG00010053435	lncRNA gene	Chr17:26873816-26875502 (+)
SPRET/EiJ	ENSMSPG00010050178	lncRNA gene	Chr17:28002137-28003830 (+)
WSB/EiJ	ENSIUOG00005051533	lncRNA gene	Chr17:28021219-28022910 (+)

Homology

• Gene Tree
  Gm50107
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118239 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118239	Ensembl Gene Model | MGI Sequence Detail	1692	C57BL/6J
transcript	ENSMUST00000236000	Ensembl | MGI Sequence Detail	1692	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;