Gm50100 Gene Detail

Summary

• Symbol
  Gm50100
• Name
  predicted gene, 50100

• Feature Type
  lncRNA gene
• IDs
  MGI:6302829
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr19:56729024-56735345 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  299 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6302829	lncRNA gene	Chr19:56729024-56735345 (-)
129S1/SvImJ	ENSMUSG00200014957	lncRNA gene	Chr19:53435645-53441945 (-)
A/J	ENSMUSG00195002594	lncRNA gene	Chr19:53606831-53613136 (-)
AKR/J	ENSMUSG00220017912	lncRNA gene	Chr19:53358337-53364637 (-)
BALB/cJ	ENSMUSG00180019437	lncRNA gene	Chr19:53845921-53852227 (-)
C3H/HeJ	ENSMUSG00175022507	lncRNA gene	Chr19:53381796-53388102 (-)
C57BL/6NJ	ENSMUSG00215029296	lncRNA gene	Chr19:53465960-53472262 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015554	lncRNA gene	Chr19:53009445-53015485 (-)
CBA/J	ENSMUSG00210021514	lncRNA gene	Chr19:53461128-53467432 (-)
DBA/2J	ENSMUSG00185028296	lncRNA gene	Chr19:53959972-53966275 (-)
FVB/NJ	ENSMUSG00205003560	lncRNA gene	Chr19:52866745-52873045 (-)
JF1/MsJ	ENSUMUG00000039322	lncRNA gene	Chr19:54145605-54151548 (-)
LP/J	ENSMUSG00230027874	lncRNA gene	Chr19:54717119-54723419 (-)
NOD/ShiLtJ	ENSMUSG00190014102	lncRNA gene	Chr19:53334140-53340443 (-)
NZO/HlLtJ	ENSMUSG00225025464	lncRNA gene	Chr19:58322812-58329112 (-)
PWK/PhJ	ENSLUMG00010018760	lncRNA gene	Chr19:53202427-53208484 (-)
SPRET/EiJ	ENSMSPG00010003395	lncRNA gene	Chr19:53065454-53071333 (-)
WSB/EiJ	ENSIUOG00005024969	lncRNA gene	Chr19:52818984-52824959 (-)

Homology

• Gene Tree
  Gm50100
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000117696 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117696	Ensembl Gene Model | MGI Sequence Detail	6322	C57BL/6J
transcript	ENSMUST00000237116	Ensembl | MGI Sequence Detail	1448	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm50100:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr159881	Chr19:56735190-56735217 (-)	141 bp
Tssr159880	Chr19:56735177-56735187 (-)	163 bp
Tssr159879	Chr19:56735164-56735174 (-)	176 bp