Gm50087 Gene Detail

Summary

• Symbol
  Gm50087
• Name
  predicted gene, 50087

• Feature Type
  lncRNA gene
• IDs
  MGI:6275421
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:80554531-80558114 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  225 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6275421	lncRNA gene	Chr17:80554531-80558114 (+)
129S1/SvImJ	ENSMUSG00200024862	lncRNA gene	Chr17:75922438-75926021 (+)
A/J	ENSMUSG00195028560	lncRNA gene	Chr17:77294281-77297865 (+)
AKR/J	ENSMUSG00220014160	lncRNA gene	Chr17:76208305-76211899 (+)
BALB/cJ	ENSMUSG00180004987	lncRNA gene	Chr17:76995755-76999338 (+)
C3H/HeJ	ENSMUSG00175016747	lncRNA gene	Chr17:76266767-76270350 (+)
C57BL/6NJ	ENSMUSG00215015217	lncRNA gene	Chr17:75982454-75986037 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015477	lncRNA gene	Chr17:76858144-76861543 (+)
CBA/J	ENSMUSG00210020731	lncRNA gene	Chr17:76128189-76131772 (+)
DBA/2J	ENSMUSG00185013003	lncRNA gene	Chr17:78961723-78965306 (+)
FVB/NJ	ENSMUSG00205031072	lncRNA gene	Chr17:76743865-76747448 (+)
JF1/MsJ	ENSUMUG00000022781	lncRNA gene	Chr17:78687606-78691200 (+)
LP/J	ENSMUSG00230022252	lncRNA gene	Chr17:79963207-79966790 (+)
NOD/ShiLtJ	ENSMUSG00190010082	lncRNA gene	Chr17:76028546-76032129 (+)
NZO/HlLtJ	ENSMUSG00225031776	lncRNA gene	Chr17:82238115-82241709 (+)
PWK/PhJ	ENSLUMG00010005651	lncRNA gene	Chr17:75907945-75911539 (+)
SPRET/EiJ	ENSMSPG00010009314	lncRNA gene	Chr17:76407124-76410402 (+)
WSB/EiJ	ENSIUOG00005010535	lncRNA gene	Chr17:76960042-76963825 (+)

Homology

• Gene Tree
  Gm50087
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000117440 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117440	Ensembl Gene Model | MGI Sequence Detail	3584	C57BL/6J
transcript	ENSMUST00000234217	Ensembl | MGI Sequence Detail	1964	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;