Gm50081 Gene Detail

Summary

• Symbol
  Gm50081
• Name
  predicted gene, 50081

• Feature Type
  lncRNA gene
• IDs
  MGI:6275412
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:6788768-6792137 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6275412	lncRNA gene	Chr18:6788768-6792137 (+)
129S1/SvImJ	ENSMUSG00200025975	lncRNA gene	Chr18:3721078-3724426 (+)
A/J	ENSMUSG00195008692	lncRNA gene	Chr18:3901107-3904476 (+)
AKR/J	ENSMUSG00220019552	lncRNA gene	Chr18:3913429-3916777 (+)
BALB/cJ	ENSMUSG00180005339	lncRNA gene	Chr18:4376033-4379403 (+)
C3H/HeJ	ENSMUSG00175007735	lncRNA gene	Chr18:3911447-3914816 (+)
C57BL/6NJ	ENSMUSG00215020223	lncRNA gene	Chr18:3621930-3625300 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017321	lncRNA gene	Chr18:3828500-3831858 (+)
CBA/J	ENSMUSG00210021996	lncRNA gene	Chr18:3918253-3921622 (+)
DBA/2J	ENSMUSG00185031235	lncRNA gene	Chr18:3900851-3904220 (+)
FVB/NJ	ENSMUSG00205038560	lncRNA gene	Chr18:3681924-3685293 (+)
JF1/MsJ	ENSUMUG00000039898	lncRNA gene	Chr18:3984627-3987984 (+)
LP/J	ENSMUSG00230028377	lncRNA gene	Chr18:5970942-5974290 (+)
NOD/ShiLtJ	ENSMUSG00190010000	lncRNA gene	Chr18:3673529-3676898 (+)
NZO/HlLtJ	ENSMUSG00225034393	lncRNA gene	Chr18:5883938-5887307 (+)
PWK/PhJ	ENSLUMG00010010009	lncRNA gene	Chr18:4142287-4145645 (+)
SPRET/EiJ	ENSMSPG00010011822	lncRNA gene	Chr18:3827647-3831000 (+)
WSB/EiJ	ENSIUOG00005027258	lncRNA gene	Chr18:3814890-3818256 (+)

Homology

• Gene Tree
  Gm50081
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000117461 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117461	Ensembl Gene Model | MGI Sequence Detail	3370	C57BL/6J
transcript	ENSMUST00000234748	Ensembl | MGI Sequence Detail	249	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm50081:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr149976	Chr18:6788906-6788911 (+)	141 bp