Gm50074 Pseudogene Detail

Summary

• Symbol
  Gm50074
• Name
  predicted gene, 50074

• Feature Type
  pseudogene
• IDs
  MGI:6275401
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:3139032-3139305 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  29 from dbSNP Build 142
• Strain Annotations
  46

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6275401	pseudogene	Chr18:3139032-3139305 (-)
129S1/SvImJ	ENSMUSG00200025314	pseudogene	Chr18:53793-54066 (-)
129S1/SvImJ	ENSMUSG00200007346	pseudogene	Chr13:178904-179177 (-)
129S1/SvImJ	ENSMUSG00200002259	pseudogene	Chr6:237696-237969 (-)
A/J	ENSMUSG00195003044	pseudogene	Chr4:223299-223572 (-)
A/J	ENSMUSG00195008796	pseudogene	Chr18:248623-248896 (-)
A/J	ENSMUSG00195002255	pseudogene	Chr6:118799-119072 (-)
AKR/J	ENSMUSG00220019720	pseudogene	Chr18:236380-236653 (-)
AKR/J	ENSMUSG00220021665	pseudogene	Chr6:29421-29694 (-)
AKR/J	ENSMUSG00220001462	pseudogene	Chr4:162758-163032 (+)
BALB/cJ	ENSMUSG00180005447	pseudogene	Chr18:713067-713340 (-)
BALB/cJ	ENSMUSG00180001693	pseudogene	Chr6:212077-212350 (-)
C3H/HeJ	ENSMUSG00175009057	pseudogene	Chr13:23976-24241 (-)
C3H/HeJ	ENSMUSG00175007920	pseudogene	Chr18:248711-248984 (-)
C3H/HeJ	ENSMUSG00175034383	pseudogene	Chr15:23976-24241 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017477	pseudogene	Chr18:258292-258565 (-)
CAST/EiJ	ENSTCUG00005027450	pseudogene	Chr6:81811-82084 (-)
CAST/EiJ	ENSTCUG00005026563	pseudogene	Chr13:244266-244539 (-)
CAST/EiJ	ENSTCUG00005027160	pseudogene	Chr4:107930-108203 (-)
CBA/J	ENSMUSG00210021991	pseudogene	Chr18:255514-255787 (-)
CBA/J	ENSMUSG00210021553	pseudogene	Chr6:20174-20447 (-)
CBA/J	ENSMUSG00210002783	pseudogene	Chr4:82121-82394 (-)
DBA/2J	ENSMUSG00185030316	pseudogene	Chr18:242265-242538 (-)
DBA/2J	ENSMUSG00185026329	pseudogene	Chr6:214702-214975 (-)
DBA/2J	ENSMUSG00185026137	pseudogene	Chr13:250449-250722 (-)
DBA/2J	ENSMUSG00185002883	pseudogene	Chr4:203398-203671 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000014444	pseudogene	Chr6:286813-287084 (-)
JF1/MsJ	ENSUMUG00000041428	pseudogene	Chr18:285768-286041 (-)
JF1/MsJ	ENSUMUG00000013554	pseudogene	Chr13:231646-231919 (-)
JF1/MsJ	ENSUMUG00000003532	pseudogene	Chr4:343653-343926 (-)
LP/J	ENSMUSG00230028676	pseudogene	Chr18:2303229-2303502 (-)
LP/J	ENSMUSG00230008714	pseudogene	Chr4:3368573-3368846 (-)
LP/J	ENSMUSG00230010098	pseudogene	Chr13:9704359-9704632 (-)
LP/J	ENSMUSG00230018247	pseudogene	Chr6:1214393-1214666 (-)
NOD/ShiLtJ	ENSMUSG00190017660	pseudogene	Chr6:71268-71541 (-)
NOD/ShiLtJ	ENSMUSG00190010602	pseudogene	Chr18:1142-1415 (-)
NZO/HlLtJ	ENSMUSG00225019546	pseudogene	Chr6:3032553-3032826 (-)
NZO/HlLtJ	ENSMUSG00225000975	pseudogene	Chr4:7353179-7353452 (-)
NZO/HlLtJ	ENSMUSG00225034834	pseudogene	Chr18:2231905-2232178 (-)
NZO/HlLtJ	ENSMUSG00225034983	pseudogene	Chr13:3592035-3592308 (-)
PWK/PhJ	ENSLUMG00010009901	pseudogene	Chr18:461978-462250 (-)
PWK/PhJ	ENSLUMG00010025231	pseudogene	Chr6:28847-29117 (-)
PWK/PhJ	ENSLUMG00010010395	pseudogene	Chr18:135109-135381 (+)
SPRET/EiJ	ENSMSPG00010005404	pseudogene	Chr12:3582-3855 (-)
SPRET/EiJ	ENSMSPG00010033623	pseudogene	Chr15:142506-142779 (-)
WSB/EiJ	ENSIUOG00005028329	pseudogene	Chr18:154599-154872 (-)

Homology

• Gene Tree
  Gm50074
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  48

• Ensembl
  ENSMUSG00000117353 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117353	Ensembl Gene Model | MGI Sequence Detail	274	C57BL/6J
transcript	ENSMUST00000234980	Ensembl | MGI Sequence Detail	274	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;