Gm50072 Pseudogene Detail

Summary

• Symbol
  Gm50072
• Name
  predicted gene, 50072

• Feature Type
  pseudogene
• IDs
  MGI:6275399
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:3015908-3016159 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6275399	pseudogene	Chr18:3015908-3016159 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195009402	pseudogene	Chr18:110306-110557 (+)
AKR/J	ENSMUSG00220019899	pseudogene	Chr18:142300-142551 (+)
BALB/cJ	ENSMUSG00180005594	pseudogene	Chr18:573449-573700 (+)
C3H/HeJ	ENSMUSG00175007686	pseudogene	Chr18:109100-109351 (+)
C57BL/6NJ	ENSMUSG00215024386	pseudogene	Chr13:135559-135810 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017785	pseudogene	Chr18:118358-118609 (+)
CBA/J	ENSMUSG00210021924	pseudogene	Chr18:115900-116151 (+)
DBA/2J	ENSMUSG00185030059	pseudogene	Chr18:103942-104193 (+)
DBA/2J	ENSMUSG00185026148	pseudogene	Chr13:142011-142262 (+)
FVB/NJ	ENSMUSG00205013997	pseudogene	Chr16:142394-142645 (+)
JF1/MsJ	ENSUMUG00000013529	pseudogene	Chr13:94385-94636 (+)
JF1/MsJ	ENSUMUG00000039642	pseudogene	Chr18:155347-155598 (+)
LP/J	ENSMUSG00230010524	pseudogene	Chr13:9567104-9567355 (+)
LP/J	ENSMUSG00230029114	pseudogene	Chr18:2163873-2164124 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225034106	pseudogene	Chr18:2093570-2093821 (+)
NZO/HlLtJ	ENSMUSG00225035117	pseudogene	Chr13:3454773-3455024 (+)
PWK/PhJ	ENSLUMG00010009489	pseudogene	Chr18:330837-331088 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005028525	pseudogene	Chr18:91600-91851 (-)

Homology

• Gene Tree
  Gm50072
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000117547 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117547	Ensembl Gene Model | MGI Sequence Detail	252	C57BL/6J
transcript	ENSMUST00000234132	Ensembl | MGI Sequence Detail	252	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;