Gm50069 Gene Detail

Summary

• Symbol
  Gm50069
• Name
  predicted gene, 50069

• Feature Type
  lncRNA gene
• IDs
  MGI:6275393
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:11788477-11790841 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  159 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6275393	lncRNA gene	Chr18:11788477-11790841 (-)
129S1/SvImJ	ENSMUSG00200026159	lncRNA gene	Chr18:8709274-8711634 (-)
A/J	ENSMUSG00195009536	lncRNA gene	Chr18:8914584-8916946 (-)
AKR/J	ENSMUSG00220019318	lncRNA gene	Chr18:8909056-8911418 (-)
BALB/cJ	ENSMUSG00180005503	lncRNA gene	Chr18:9358788-9361148 (-)
C3H/HeJ	ENSMUSG00175007943	lncRNA gene	Chr18:8898141-8900501 (-)
C57BL/6NJ	ENSMUSG00215021114	lncRNA gene	Chr18:8627198-8629562 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017496	lncRNA gene	Chr18:8679283-8681651 (-)
CBA/J	ENSMUSG00210021973	lncRNA gene	Chr18:8906988-8909348 (-)
DBA/2J	ENSMUSG00185030761	lncRNA gene	Chr18:8922071-8924433 (-)
FVB/NJ	ENSMUSG00205035953	lncRNA gene	Chr18:8688771-8691133 (-)
JF1/MsJ	ENSUMUG00000043236	lncRNA gene	Chr18:8942267-8944628 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190010612	lncRNA gene	Chr18:8686607-8688971 (-)
NZO/HlLtJ	ENSMUSG00225028129	lncRNA gene	Chr18:10905448-10907810 (-)
PWK/PhJ	ENSLUMG00010009586	lncRNA gene	Chr18:9171320-9173672 (-)
SPRET/EiJ	ENSMSPG00010012065	lncRNA gene	Chr18:8808264-8810628 (-)
WSB/EiJ	ENSIUOG00005027503	lncRNA gene	Chr18:8779615-8781979 (-)

Homology

• Gene Tree
  Gm50069
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000117634 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117634	Ensembl Gene Model | MGI Sequence Detail	2365	C57BL/6J
transcript	ENSMUST00000235010	Ensembl | MGI Sequence Detail	2365	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm50069:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152451	Chr18:11790802-11790813 (-)	33 bp