Gm50068 Gene Detail

Summary

• Symbol
  Gm50068
• Name
  predicted gene, 50068

• Feature Type
  lncRNA gene
• IDs
  MGI:6275391
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:29482973-29484182 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  188 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6275391	lncRNA gene	Chr17:29482973-29484182 (+)
129S1/SvImJ	ENSMUSG00200054365	lncRNA gene	Chr17:25137729-25138942 (+)
A/J	ENSMUSG00195054613	lncRNA gene	Chr17:25952809-25954009 (+)
AKR/J	ENSMUSG00220053895	lncRNA gene	Chr17:25000468-25001668 (+)
BALB/cJ	ENSMUSG00180051791	lncRNA gene	Chr17:25440241-25441454 (+)
C3H/HeJ	ENSMUSG00175054058	lncRNA gene	Chr17:24988770-24989970 (+)
C57BL/6NJ	ENSMUSG00215054561	lncRNA gene	Chr17:24999334-25000543 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051492	lncRNA gene	Chr17:25724482-25725680 (+)
CBA/J	ENSMUSG00210051087	lncRNA gene	Chr17:24827209-24828409 (+)
DBA/2J	ENSMUSG00185055144	lncRNA gene	Chr17:27043863-27045076 (+)
FVB/NJ	ENSMUSG00205053594	lncRNA gene	Chr17:25312261-25313461 (+)
JF1/MsJ	ENSUMUG00000058043	lncRNA gene	Chr17:26512305-26512734 (+)
LP/J	ENSMUSG00230055221	lncRNA gene	Chr17:28563479-28564692 (+)
NOD/ShiLtJ	ENSMUSG00190054367	lncRNA gene	Chr17:24945716-24946925 (+)
NZO/HlLtJ	ENSMUSG00225055045	lncRNA gene	Chr17:30540160-30541369 (+)
PWK/PhJ	ENSLUMG00010053542	lncRNA gene	Chr17:24430826-24432024 (+)
SPRET/EiJ	ENSMSPG00010050584	lncRNA gene	Chr17:25718731-25719921 (+)
WSB/EiJ	ENSIUOG00005052394	lncRNA gene	Chr17:25707757-25708966 (+)

Homology

• Gene Tree
  Gm50068
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000117614 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117614	Ensembl Gene Model | MGI Sequence Detail	1210	C57BL/6J
transcript	ENSMUST00000234345	Ensembl | MGI Sequence Detail	1210	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;